1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatctatattagggactttactcctttttcatgttgtctcattgtactgtggccataagatattgggaaatcacgagcttcctattcatcaagtt...
species | Oryza sativa |
transcript | LOC_Os02g53060.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|88421759|gb|CI621403.1|CI621403
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|218499779|gb|FG945547.1|FG945547
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|66924564|gb|CX111412.1|CX111412
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTEST: gi|88721882|gb|CI743394.1|CI743394
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTT
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|88573296|gb|CI664867.1|CI664867
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|58588610|gb|CF986918.1|CF986918
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|88358083|gb|CI605008.1|CI605008
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|58692319|gb|CK081006.1|CK081006
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|25799545|gb|CA755506.1|CA755506
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|88309396|gb|CI655764.1|CI655764
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|38477245|gb|CF961378.1|CF961378
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|218498714|gb|FG963991.1|FG963991
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|88390264|gb|CI605717.1|CI605717
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|218498950|gb|FG948071.1|FG948071
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|38472737|gb|CF956869.1|CF956869
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|88720636|gb|CI743935.1|CI743935
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCACCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTCCCGATTATGTACGCTATTCTCTCCACCAAEST: gi|88584075|gb|CI701601.1|CI701601
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATEST: gi|33803228|gb|CF327486.1|CF327486
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAAT
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|88302060|gb|CI667906.1|CI667906
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|218504275|gb|FG947024.1|FG947024
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|88338208|gb|CI633327.1|CI633327
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|13165514|gb|AU174311.1|AU174311
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|88342591|gb|CI655593.1|CI655593
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|88692730|gb|CI736305.1|CI736305
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|218486985|gb|FG965418.1|FG965418
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAAEST: gi|14191702|gb|AU183913.1|AU183913
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
EST: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCT GCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
genomic: ACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatct ... tgtctcacagGCTGCTGATACACAAGTAATTTCCGATTATGTACGCTATTTTCTCCACCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGTATGTGGCAAACCGTGCGTCGGACAAGATTACTCAGCTAACTGACAATGTGTACATCTGCCGCTCTGGATCTgtaagtatctatattagggactttactcctttttcatgttgtctcattgtactgtggccataagatattgggaaatcacgagcttcctattcatcaagtt
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