1 5' 3' | 2 5' 3' | 3 5' 3' |
GGATGGGTTTGTATTTGCTGTCAAAGAGGCTTCGTTGATTGGTCCCGAAAGCTATACGAAGCAAACCGCATGTCAGCTAAAGCAGgtagttttatctcttatcaattaattaggtgaaaaattatcttgtaagtgtttaattaagcaaattgcaatttttgtcaggggtaaaatttcagagtattgatgttctccaattctaaatgattccaagtataagctaattcagtattagtaacaacatttcag
species | Oryza sativa |
transcript | LOC_Os02g53030.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGATTGGTCCCGAAAGCTATACGAAGCAAACCGCATGTCAGCTAAAGCAG GAAATCTTGCTTCTTAGTCGGTTGGAGCACAAGAACATAGTGCAGTATTTTEST: gi|88241222|gb|CI241071.1|CI241071
genomic: TGATTGGTCCCGAAAGCTATACGAAGCAAACCGCATGTCAGCTAAAGCAGgtagttttat ... aacatttcagGAAATCTTGCTTCTTAGTCGGTTGGAGCACAAGAACATAGTGCAGTATTTT
EST: TGATTGGTCCCGAAAGCTATACGAAGCAAACCGCATGTCAGCTAAAGCAG GAAATCTTGCTTCTTAGTCGGTTGGAGCACAAGAACATAGTGCAGTATTTT
genomic: TGATTGGTCCCGAAAGCTATACGAAGCAAACCGCATGTCAGCTAAAGCAGgtagttttat ... aacatttcagGAAATCTTGCTTCTTAGTCGGTTGGAGCACAAGAACATAGTGCAGTATTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGGGTTTGTATTTGCTGTCAAAGAGGCTTCGTTGATTGGTCCCGAAAGCTATACGAAGCAAACCGCATGTCAGCTAAAGCAGgtagttttatctcttatcaattaattaggtgaaaaattatcttgtaagtgtttaattaagcaaattgcaatttttgtcaggggtaaaatttcagagtattgatgttctccaattctaaatgattccaagtataagctaattcagtattagtaacaacatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT