1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGATTATGACATGGACGACACTGCTGATGACATGGGCGAAGAGAACTATGAGCGAGGGATGAGGGATTCGGATTCAGAGGATGAAGAGCATGGCCAGTCGgtatgtccaatcttctctctttgttgattcattgcatgtgtaatcaagttttcgcaacattattttttgtgaagttctttttttgtttgttggaacacta...
species | Oryza sativa |
transcript | LOC_Os02g48964.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCGAGGGATGAGGGATTCGGATTCAGAGGATGAAGAGCATGGCCAGTCG AATGATAAGATCCCAGATACCTCATCAGEST: gi|29671102|gb|CB667377.1|CB667377
genomic: AGCGAGGGATGAGGGATTCGGATTCAGAGGATGAAGAGCATGGCCAGTCGgtatgtccaa ... tcctgtgtagAATGATAAGATCCCAGATACCTCATCAG
EST: AGCGAGGGATGAGGGATTCGGATTCAGAGGATGAAGAGCATGGCCAGTCG AATGATAAGATCCCAGATACCTCATCAGTTGATGCAAGAAAAGGAAAGGATEST: gi|29619648|gb|CB624660.1|CB624660
genomic: AGCGAGGGATGAGGGATTCGGATTCAGAGGATGAAGAGCATGGCCAGTCGgtatgtccaa ... tcctgtgtagAATGATAAGATCCCAGATACCTCATCAGTTGATGCAAGAAAAGGAAAGGAT
EST: AGCGAGGGATGAGGGATTCGGATTCAGAGGATGAAGAGCATGGCCAGTCG AATGATAAGATCCCAGATACCTCATCAGCGGATGCAAGAAAAGGAAAGGATEST: gi|29672638|gb|CB668913.1|CB668913
genomic: AGCGAGGGATGAGGGATTCGGATTCAGAGGATGAAGAGCATGGCCAGTCGgtatgtccaa ... tcctgtgtagAATGATAAGATCCCAGATACCTCATCAGTTGATGCAAGAAAAGGAAAGGAT
EST: AGCGAGGGATGAGGGATTCGGATTCAGAGGATGAAGAGCATGGCCAGTCG AATGATAAGATCCCAGATACCTCATCAGTTGATGCAAGAAAAGGAAAGGAT
genomic: AGCGAGGGATGAGGGATTCGGATTCAGAGGATGAAGAGCATGGCCAGTCGgtatgtccaa ... tcctgtgtagAATGATAAGATCCCAGATACCTCATCAGTTGATGCAAGAAAAGGAAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTATGACATGGACGACACTGCTGATGACATGGGCGAAGAGAACTATGAGCGAGGGATGAGGGATTCGGATTCAGAGGATGAAGAGCATGGCCAGTCGgtatgtccaatcttctctctttgttgattcattgcatgtgtaatcaagttttcgcaacattattttttgtgaagttctttttttgtttgttggaacacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctctc