1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTATAGAGCCATACAGCTCCGACAAAAGGATTCACCTATTCCAGAATGTCTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAGgtatgcgtgtgaactgctccatacttgttcatgtcataactcattagagatttttttttttgcttgtgtatttgtgttcaagtagaggttcttcttttctatttttgaattatcag
species | Oryza sativa |
transcript | LOC_Os02g48830.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAG TCGGTATGGGATGAAGTTGGTGAAAGCGAGGAGGACCGCEST: gi|88364157|gb|CI610501.1|CI610501
genomic: CTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAGgtatgcgtgt ... gaattatcagTCGGTATGGGATGAAGTTGGTGAAAGCGAGGAGGACCGC
EST: CTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAG TCGGTATGGGATGAAGTTGGTGAAAGCGAGGAGGACCGCGACAAGGTTCTAEST: gi|88393226|gb|CI616710.1|CI616710
genomic: CTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAGgtatgcgtgt ... gaattatcagTCGGTATGGGATGAAGTTGGTGAAAGCGAGGAGGACCGCGACAAGGTTCTA
EST: CTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAG TCGGTATGGGATGAAGTTGGTGAAAGCGAGGAGGACCEST: gi|58673175|gb|CK061861.1|CK061861
genomic: CTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAGgtatgcgtgt ... gaattatcagTCGGTATGGGATGAAGTTGGTGAAAGCGAGGAGGACC
EST: CTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAG TCGGTATGGGATGAAGTTGGTGAAAGCGAGGAGGACCGCGACAAGGTTCTAEST: gi|88584957|gb|CI702552.1|CI702552
genomic: CTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAGgtatgcgtgt ... gaattatcagTCGGTATGGGATGAAGTTGGTGAAAGCGAGGAGGACCGCGACAAGGTTCTA
EST: CTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAG TCGGTATGGGATGAAGTTGGTGAAAGCGAGGAGGACCGCGEST: gi|88316618|gb|CI622864.1|CI622864
genomic: CTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAGgtatgcgtgt ... gaattatcagTCGGTATGGGATGAAGTTGGTGAAAGCGAGGAGGACCGCG
EST: CTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAG TCGGTATGGGATGAAGTTGGTGAAAGCGAGGAGGACCGCGACAAGGTTCTA
genomic: CTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAGgtatgcgtgt ... gaattatcagTCGGTATGGGATGAAGTTGGTGAAAGCGAGGAGGACCGCGACAAGGTTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTATAGAGCCATACAGCTCCGACAAAAGGATTCACCTATTCCAGAATGTCTGCTTTGCTCCGTGAAACTTCGTGTGGATCATTGCTGCAAAAACTGCAGgtatgcgtgtgaactgctccatacttgttcatgtcataactcattagagatttttttttttgcttgtgtatttgtgttcaagtagaggttcttcttttctatttttgaattatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG