1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCGAGGAAGGCATGCGAGGACCCGACGCCGGTGATCGACGGCAGGCGTGCCAATTGTAACCTGGCGTCGCTTGGCCGCGCTCAGCCTGCAGTTCCTCTCGgtattgatctccctgccttgacactgatttgcactaacttattcgagtagattatgagcacattttgataccaccgtgaggatttgcttgctagcaagtt...
species | Oryza sativa |
transcript | LOC_Os02g48340.5 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAATTGTAACCTGGCGTCGCTTGGCCGCGCTCAGCCTGCAGTTCCTCTCG GGAGGCCAAGATCAGCTGGGTCCTACTTTGGCGTTCCAGTTCCAAGGGGTGEST: gi|29658157|gb|CB654432.1|CB654432
genomic: CAATTGTAACCTGGCGTCGCTTGGCCGCGCTCAGCCTGCAGTTCCTCTCGgtattgatct ... atcttttcagGGAGGCCAAGATCAGCTGGGTCCTACTTTGGCGTTCCAGTTCCAAGGGGTG
EST: CAATTGTAACCTGGCGTCGCTTGGCCGCGCTCAGCCTGCAGTTCCTCTCG GGAGGCCAAGATCAGCTGGGTCCTACTTTGGCGTTCCAGTTCCAAGGGGTGEST: gi|58659877|gb|CK048557.1|CK048557
genomic: CAATTGTAACCTGGCGTCGCTTGGCCGCGCTCAGCCTGCAGTTCCTCTCGgtattgatct ... atcttttcagGGAGGCCAAGATCAGCTGGGTCCTACTTTGGCGTTCCAGTTCCAAGGGGTG
EST: CAATTGTAACCTGGCGTCGCTTGGCCGCGCTCAGCCTGCAGTTCCTCTCG GGAGGCCAAGATCAGCTGGGTCCTACTTTGGCGTTCCAGTTCCAAGGGGTG
genomic: CAATTGTAACCTGGCGTCGCTTGGCCGCGCTCAGCCTGCAGTTCCTCTCGgtattgatct ... atcttttcagGGAGGCCAAGATCAGCTGGGTCCTACTTTGGCGTTCCAGTTCCAAGGGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGAGGAAGGCATGCGAGGACCCGACGCCGGTGATCGACGGCAGGCGTGCCAATTGTAACCTGGCGTCGCTTGGCCGCGCTCAGCCTGCAGTTCCTCTCGgtattgatctccctgccttgacactgatttgcactaacttattcgagtagattatgagcacattttgataccaccgtgaggatttgcttgctagcaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG