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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTTACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGgtaacccctaagttccaagcacttcgcatactatcttatcatcccgtaatttggacagaacttcctttacatttgaaagatttccttaataagcacagaa...

Basic information

species Oryza sativa
transcript LOC_Os02g47860.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 2
GTGTTTACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGgtaacccctaagttccaagcacttcgcatactatcttatcatcccgtaatttggacagaacttcctttacatttgaaagatttccttaat--aagcacagaa
||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||||||||||||||  | |||   |||||||||| ||||| | ||||||  |  | | | |  |  | |||    ||  |   |  | |  |     ||   ||   | | |
GTGTTCACTGAGAAGGTGGTCAATTTCATGCCTGATGTTGCTGTGATATCAATGGACAACTATAATGACGCAACTCGCATAGTCGATGGCAATTTTGATGgtaattc-taatcaccaagcactttgcatattgtcttatagtttctttaatccg-tataaccaagttcccggatcgacgggtcgaggaacggaaatgcggta

upper sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA02G14110.1 (Glycine max), 5'ss of exon 2
GTGTTTACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGgtaacccctaagttccaagcacttcgcatactatcttatcatcccgtaatttggacagaacttcctttacatttgaaagatttccttaataagcacagaa--
|| |||||||| ||| | ||||| ||||||||| |  |||| || || ||||||||||| ||||||||||| ||||| || |||||||| ||||||||||||||  | | |  ||    |  |||  ||   ||  | | |||        |     | | |  |         |    ||  | | | ||| || |     
GTATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAGTCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatca--tctggccttttcttatgtgatgcttttatcattcttactatggtgcattatcaggctgcaggctgcatagcatgattaaacataattct

upper sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 2
GTGTTTACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGgtaacccctaag----ttccaagcacttcgcatactatcttatcatcccgtaatttggacagaacttcctttacatttgaaagatttccttaataagcacagaa
 | |||||||| ||| | ||||| ||||||||| |  ||||  | || ||||||||||| ||||||||||| ||||| || |||||||| ||||||||||||||  | |  |    || |       | || |      || | |    |     |   |||         | |||  | | ||||  | ||||   |      
ATATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAATCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatctggccttttcttatgtgttgcttttatcattcttactatggtgcattatcaggctgcaggctgcata-gcatgattaacataattctcctg---

upper sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 2
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 2
GTGTTTACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGgtaacccctaagttccaagcacttcgcatacta-------tcttatcatcccgtaatttgga-cagaacttcctttacatttgaaagatttccttaataagcacagaa
|| || ||||||||| | ||||||||  ||||  |||||||||| || |||||||| || || |||||| | ||||| || |||||||| || |||||||||||    |    ||     |  || |||           || ||| |  |  |  |||| | |   |  |   || |   ||| | |  |  |   |    ||  | 
GTATTCACTGAGAAGATACTCAATTTTCTGCCAAGTGTTGCTGTCATTTCAATGGACAATTATAATGATTCTAGTCGGATTGTTGATGGGAACTTTGATGgtaagaattttcatcttgataggtcccatgaggaatgaagtcctatgacacattgttttgaaacttgaagtatcttgctgctgacaaaccttatgttttgaaacttag

upper sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv17s0000g04650.t01 (Vitis vinifera), 5'ss of exon 1
GTGTTTACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGgtaacccctaa-gttccaagcacttcgcatactatcttatcatcccgtaatttggacagaacttcctttacatttgaaagatttccttaataagcacagaa
||| ||||||||||||||||||| || |||||| |  ||||||| || || ||||| |||||||||||| | || || ||  |||||||||| |||||||||||   || | ||||       ||    | | || |    |  ||   | |||  |||   ||| ||| | ||     ||   |  |   ||       |
GTGCTTACTGAGAAGGTGCTCAACTTTATGCCCAGCATTGCTGTCATTTCCATGGACAACTACAATGATTCCAGCCGTATCATTGATGGCAACTTTGATGgtaatatctcatgttcttctgttttttggttcaatttgggaaatcctgtagttgatcagtg-ttcatttcctttcatgggacacctctttaaactttttta

upper sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 1
GTGTTTACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGgtaacccctaagttccaagcacttcgcatactatcttatcatcccgtaatttggacagaacttcctttacatttgaa----agatttccttaataagcacagaa----
|| |||||||| ||| | ||||| || |||||| |  ||||||| ||||||||||| |||||||||||||| || || || ||||||||||| |||||||||||  | |   |||        || ||| || | || || |   |   ||   |||   |||  |  |  ||| ||    | |  |    |||||| |         
GTTTTTACTGAAAAGATACTCAACTTTATGCCCAGCATTGCTGTCATATCAATGGACAACTACAATGATGCTAGCCGAATTGTTGATGGCAACTTTGATGgtaaatcttgttttc--------tctcatcctgttttttcttgaagctgttaacacaagtcttgatggaatttttaacaggataggtttcaaataagtatttgtttta