Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTTCAGTTCCAGCTCACAATGATGGCCTTGATAATGCAAATTCTGACCTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAGgttagttttcttcttgacttgttaacccttttatgtgattcaatatttgtgtctgttgtccatttcttagtgagttagagcactcaaaacatttttacca...

Basic information

species Oryza sativa
transcript LOC_Os02g47410.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47410.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G849796_T01 (Zea mays), 5'ss of exon 2
ACCCTTCAGTTCCAGCTCACAATGATGGCCTTGATAATGCAAATTCTGACCTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAGgttagttttcttcttgacttgttaacccttttatgtgattcaat-atttgtgtctgttgtccatttcttagtgagttagagcactcaaaacatttttacca
| ||  ||||||| | ||||||  |||| ||||| |||||||| ||||| ||||| |||||||||||| ||||| || |||||||||||||   ||||||||||||||||||||     |  |        ||    ||||     ||            ||||||  | | | |||       ||| || ||   ||| |
ATCCCGCAGTTCCTGTTCACAACCATGGTCTTGACAATGCAAACTCTGATCTCATATTGTATGTCAACCTGGAACTGCTTAATAAAAAGTCAAGCCGGAGgttagttttcttctctttattctttatggagtaccaaattctgccgttcacaatataaagccatttgctcgggtgttttcat-ttcacaatataactacta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88427457|gb|CI571660.1|CI571660
EST:     CTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGAC-GGAG                         GTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA
genomic: CTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAGgttagttttc ... ttctaagtagGTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA
EST: gi|38470825|gb|CF954956.1|CF954956
EST:     CTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAG                         GTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA
genomic: CTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAGgttagttttc ... ttctaagtagGTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA
EST: gi|58659441|gb|CK048121.1|CK048121
EST:     CTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAG                         GTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA
genomic: CTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAGgttagttttc ... ttctaagtagGTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA
EST: gi|58666776|gb|CK055462.1|CK055462
EST:     ATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAG                         GTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA
genomic: ATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAGgttagttttc ... ttctaagtagGTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA