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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCGGAACAAGCCACCGGAGCCCGAGAACGTCTCTGCCGCGGATACTGCTTCTACCCACCAGGCCAAGCCGGCCAAGCAGCGGCGCTACATTCCCCAGgtaacgcacgagctttgatgttccttcctttacattgatgcaacgatgtgggattgtgattactgatgcggctttgaaaccgatgtag

Basic information

species Oryza sativa
transcript LOC_Os02g47180.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47180.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G085908_T01 (Zea mays), 5'ss of exon 2
---------------------------------------------------------------------CTTCCGGAACAAGCCACCGGAGCCCGAGAACGTCTCTGCCGCGGATACTGCTTCTACCCACC---AGGCCAAGCCGGCCAAGCAGCGGCGCTACATTCCCCAGgta-acgcacgagctttgatgttccttccttta-ca--ttgatgcaacgatgtgg-----------gattgtg-attactgatgcggct---ttgaaaccgatgtag
                                                                     |||| |||||||||  || || ||||||||||| |||  | |  ||   |||||  || |||   ||||| |||||||||||||||||||| |||||||| |||||   | |  |||| |  || | |  | | || ||   | |||||||| ||| |            || ||| || ||||||| || |   |  |||    |  ||
CCCGTCCAAGGAGGCATATAGGAGGCTGCTCGCGAGGAAGCTGTTCAACAACCAGACACAAATCCTCGCCTTCAGGAACAAGCTGCCAGAACCCGAGAACgtgtctatcaccaatgtcgcttcctccaacctgtaggccgagccggccaagcagcggcgccacattccctaggtacgtgtaatagctcttctgattccacatctagcaatcttatgcaacggtgtagtggcatatgaaaatggtggatcactgatgtggttgagtcaaaatatgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58682281|gb|CK070968.1|CK070968
EST:     CTTCTACCCACCAGGCCAAGCCGGCCAAGCAGCGGCGCTACATTCCCCAG                         TCTGCCGAGAGGACTCTGGATGCACCGGACCTCGTCGACGATTACTATCTC
genomic: CTTCTACCCACCAGGCCAAGCCGGCCAAGCAGCGGCGCTACATTCCCCAGgtaacgcacg ... accgatgtagTCTGCCGAGAGGACTCTGGATGCACCGGACCTCGTCGACGATTACTATCTC
EST: gi|58673539|gb|CK062225.1|CK062225
EST:     CTTCTACCCACCAGGCCAAGCCGGCCAAGCAGCGGCGCTACATTCCCCAG                         TCTGCCGAGAGGACTCTGGATGCACCGGACCTCGTCGACGATTACTATCTC
genomic: CTTCTACCCACCAGGCCAAGCCGGCCAAGCAGCGGCGCTACATTCCCCAGgtaacgcacg ... accgatgtagTCTGCCGAGAGGACTCTGGATGCACCGGACCTCGTCGACGATTACTATCTC