1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGgtatgttgctgattactttgtcgcaatattttttttttcgctcatgtcctctgtgcgaaattcgaagttaaatcaaggctttacggttaaactagtcaag...
species | Oryza sativa |
transcript | LOC_Os02g47110.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTG GGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGEST: gi|66919065|gb|CX105913.1|CX105913
genomic: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGgtatgttgct ... gtaccaccagGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGG
EST: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTG GGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGEST: gi|88359999|gb|CI608513.1|CI608513
genomic: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGgtatgttgct ... gtaccaccagGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGG
EST: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTG GGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGEST: gi|2310427|gb|C26582.1|C26582
genomic: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGgtatgttgct ... gtaccaccagGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGG
EST: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTG GGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGEST: gi|88311186|gb|CI570260.1|CI570260
genomic: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGgtatgttgct ... gtaccaccagGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGG
EST: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTG GGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGEST: gi|2310382|gb|C26537.1|C26537
genomic: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGgtatgttgct ... gtaccaccagGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGG
EST: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTG GGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGEST: gi|33692402|gb|CF320641.1|CF320641
genomic: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGgtatgttgct ... gtaccaccagGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGG
EST: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTG GGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGEST: gi|88405611|gb|CI588817.1|CI588817
genomic: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGgtatgttgct ... gtaccaccagGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGG
EST: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTG GGTT-AATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGGEST: gi|88825559|gb|CI776124.1|CI776124
genomic: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGgtatgttgct ... gtaccaccagGGTTCAATGTTGAGAAAGTACAGTACAAGAACGTGATGTTTACAGTATGGG
EST: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTG GGTTCAATGTTGAGAAAGTACAGTACAAGAACCGTGATGTTTACAGTATGG
genomic: CCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGgtatgttgct ... gtaccaccagGGTTCAATGTTGAGAAAGTACAGTACAAGAAC-GTGATGTTTACAGTATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGTGATGCTTGGGCTGGATGCCGCGGGCAAAACCACCATCCTGTACAAGCTGCACATCGGGGAGGTCCTTTCGACTGTTCCTACGATTGgtatgttgctgattactttgtcgcaatattttttttttcgctcatgtcctctgtgcgaaattcgaagttaaatcaaggctttacggttaaactagtcaag
- - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - AGCTGC