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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCACGGTTTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTTgtaagcaccaccacacggcacatccctctctctccgcagttctatctgaaaaccacgcgcctttctcggtgcgatcgattgatctcatgtttctagctac...

Basic information

species Oryza sativa
transcript LOC_Os02g46460.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g46460.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G044851_T01 (Zea mays), 5'ss of exon 3
CGGCACGGTTTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTTgtaagcaccaccacacggcacatccctctctc--tccgcagttctatctgaaaaccacgcgcctttctcggtgcgatcgattgatctcatgtttctagctac
 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||   |||    |  |  | |  |   ||   | || | | | ||     | |   |    | |        | ||  ||     | |  | |    ||
GGGCACCGTGTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGACGCTACAAGACCTGCGCCATCTTCCAGGCCATCTTTGTCCTCgtaagtcgcacacgtctacctacctattaatcgacctgccgatttttccatcgatctgccaatctaccgatcagcagcgtgtgtcggaaagagttt--tcac

upper sequence: LOC_Os02g46460.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv15s0021g00330.t01 (Vitis vinifera), 5'ss of exon 3
CGGCACGGTTTACATGTTCTCCCTCATCGGCGCCTTCCTCAGCGACTCCTACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTTgtaagcacc--accacacggcacatccctctctct---ccgcagttctatctgaaaaccacgcgcctttctcggtgcgatcgattgatctcatgtttctagctac
 || || || ||||| ||||| ||  | || ||||| || |||||||| ||||||||  | ||||||||||| ||||| || |||| |||||||||| |||||||   |  |  | |  |  ||||        |    ||  | |  || |  | |    |     |||   || | | | |   || |    || |       
TGGAACTGTCTACATTTTCTCTCTTCTGGGTGCCTTTCTTAGCGACTCTTACTGGGGGAGGTACAAGACCTGTGCCATCTTTCAGGTCATCTTTGTCATTgtaagtttctaagtataaagaccatcaaggaaaatgtatcgaggattgatttatatagtctgt---cttcctagttctaacaaagtatgttggattgcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38468489|gb|CF952620.1|CF952620
EST:     ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTT                         GGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTC
genomic: ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTTgtaagcacca ... ttgcctgcagGGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTC
EST: gi|117249165|gb|CT862971.1|CT862971
EST:     ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTT                         GGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTC
genomic: ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTTgtaagcacca ... ttgcctgcagGGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTC
EST: gi|29638526|gb|CB643535.1|CB643535
EST:     ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTT                         GGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTC
genomic: ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTTgtaagcacca ... ttgcctgcagGGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTC
EST: gi|87005457|gb|CI285679.1|CI285679
EST:     ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTT                         GGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTC
genomic: ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTTgtaagcacca ... ttgcctgcagGGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTC