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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAATGCGCCCTGGCAAGGGTACATTTGGTGATAGGTGCATCGTGAAAGCCAACCATTTCTTTGCTGAATTGCCTGACAAAGACCTTCACCAGTATGATgtaagatcttgtttatgtgttgccttgttatacttatacatatgaagctttgtaacttttgttgtttttcatgagctttcatttaacatgctttcag

Basic information

species Oryza sativa
transcript LOC_Os02g45070.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29657068|gb|CB653343.1|CB653343
EST:     CCAACCATTTCTTTGCTGAATTGCCTGACAAAGACCTTCACCAGTATGAT                         GTGTCTATAACTCCTGAGGTTCCTTCACGTGGTGTCAATCGTGCTGTCATT
genomic: CCAACCATTTCTTTGCTGAATTGCCTGACAAAGACCTTCACCAGTATGATgtaagatctt ... atgctttcagGTGTCTATAACTCCTGAGGTTCCTTCACGTGGTGTCAATCGTGCTGTCATT
EST: gi|58662481|gb|CK051167.1|CK051167
EST:     CCAACCATTTCTTTGCTGAATTGCCTGACAAAGACCTTCACCAGTATGAT                         GTGTCTATAACTCCTGAGGTTCCTTCACGTGGTGTCAATCGTGCTGTCATT
genomic: CCAACCATTTCTTTGCTGAATTGCCTGACAAAGACCTTCACCAGTATGATgtaagatctt ... atgctttcagGTGTCTATAACTCCTGAGGTTCCTTCACGTGGTGTCAATCGTGCTGTCATT
EST: gi|29634279|gb|CB639288.1|CB639288
EST:     CCAACCATTTCTTTGCTGAATTGCCTGACAAAGACCTTCACCAGTATGAT                         GTGTCTATAACTCCTGAGGTTCCTTCACGTGGTGTCAATCGTGCTGTCATT
genomic: CCAACCATTTCTTTGCTGAATTGCCTGACAAAGACCTTCACCAGTATGATgtaagatctt ... atgctttcagGTGTCTATAACTCCTGAGGTTCCTTCACGTGGTGTCAATCGTGCTGTCATT
EST: gi|29626578|gb|CB631589.1|CB631589
EST:     CCAACCATTTCTTTGCTGAATTGCCTGACAAAGACCTTCACCAGTATGAT                         GTGTCTATAACTCCTGAGGTTCCTTCACGTGGTGTCAATCGTGCTGTCATT
genomic: CCAACCATTTCTTTGCTGAATTGCCTGACAAAGACCTTCACCAGTATGATgtaagatctt ... atgctttcagGTGTCTATAACTCCTGAGGTTCCTTCACGTGGTGTCAATCGTGCTGTCATT