1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACAAAGACCTGTGAAATTCTGGTTCATAAAGAATTATCTATCTCCACAGTTCAAGgtacgtgagctgcctttgcttgagttgagtatttaatgagaagatattagatgtctgcctttagttgagtatttcatgagaagatattagatgtcttcctttgagttgagtaatgagaagatattagatgcctgttgtctaaccaataatccaatggccag
species | Oryza sativa |
transcript | LOC_Os02g44510.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GACCTGTGAAATTCTGGTTCATAAAGAACTATCTATCTCCACAGTTCAAG GATGTCATACCCCATATGGCCCAGGAATATGGATTTGAGTACGAGCTTGTCEST: gi|58658861|gb|CK047541.1|CK047541
genomic: GACCTGTGAAATTCTGGTTCATAAAGAATTATCTATCTCCACAGTTCAAGgtacgtgagc ... caatggccagGATGTCATACCCCATATGGCCCAGGAATATGGATTTGAGTACGAGCTTGTC
EST: GACCTGTGAAATTCTGGTTCATAAAGAACTATCTATCTCCACAGTTCAAG GATGTCATACCCCATATGGCCCAGGAATATGGATTTGAGTACGAGCTTGTCEST: gi|58605088|gb|CK033121.1|CK033121
genomic: GACCTGTGAAATTCTGGTTCATAAAGAATTATCTATCTCCACAGTTCAAGgtacgtgagc ... caatggccagGATGTCATACCCCATATGGCCCAGGAATATGGATTTGAGTACGAGCTTGTC
EST: GACCTGTGAAATTCTGGTTCATAAAGAACTATCTATCTCCACAGTTCAAG GATGTCATACCCCATATGGCCCAGGAATATGGATTTGAGTACGAGCTTGTCEST: gi|58658473|gb|CK047153.1|CK047153
genomic: GACCTGTGAAATTCTGGTTCATAAAGAATTATCTATCTCCACAGTTCAAGgtacgtgagc ... caatggccagGATGTCATACCCCATATGGCCCAGGAATATGGATTTGAGTACGAGCTTGTC
EST: GACCTGTGAAATTCTGGTTCATAAAGAACTATCTATCTCCACAGTTCAAG GATGTCATACCCCATATGGCCCAGGAATATGGATTTGAGTACGAGCTTGTC
genomic: GACCTGTGAAATTCTGGTTCATAAAGAATTATCTATCTCCACAGTTCAAGgtacgtgagc ... caatggccagGATGTCATACCCCATATGGCCCAGGAATATGGATTTGAGTACGAGCTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACAAAGACCTGTGAAATTCTGGTTCATAAAGAATTATCTATCTCCACAGTTCAAGgtacgtgagctgcctttgcttgagttgagtatttaatgagaagatattagatgtctgcctttagttgagtatttcatgagaagatattagatgtcttcctttgagttgagtaatgagaagatattagatgcctgttgtctaaccaataatccaatggccag
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