1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTATgtaagttcagaggagttcttgagattatcctaacaacatttacgagcggttaatttagccttaaccatccgtggtttcttctctccgttgaattctcgcgtgcag
species | Oryza sativa |
transcript | LOC_Os02g43594.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTAT TTGAGCTGGACAAACCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCGEST: gi|88401755|gb|CI591082.1|CI591082
genomic: TGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTATgtaagttcag ... tcgcgtgcagTTGAGCTGGACAAACCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCG
EST: TGGCGGGGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTAT TTGAGCTGGACAAACCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCGEST: gi|88389102|gb|CI595336.1|CI595336
genomic: TGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTATgtaagttcag ... tcgcgtgcagTTGAGCTGGACAAACCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCG
EST: TGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTAT TTGAGCTGGACAAACCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCGEST: gi|88405086|gb|CI685534.1|CI685534
genomic: TGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTATgtaagttcag ... tcgcgtgcagTTGAGCTGGACAAACCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCG
EST: TGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTAT TTGAGCTGGACAAACCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCGEST: gi|88581198|gb|CI698173.1|CI698173
genomic: TGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTATgtaagttcag ... tcgcgtgcagTTGAGCTGGACAAACCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCG
EST: TGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTAT TTGAGCTGGACAAACCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCG
genomic: TGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTATgtaagttcag ... tcgcgtgcagTTGAGCTGGACAAACCGTGCTATTGCAATCTCAAGGTGGTGAACAACAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGGCAATGGGTGGCGGCGGAACGCTGATCTCCATCTACCCCGAGGACCTCACTTTCCTATgtaagttcagaggagttcttgagattatcctaacaacatttacgagcggttaatttagccttaaccatccgtggtttcttctctccgttgaattctcgcgtgcag
- - - - - - - - - - - - GCTGAT