1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaacatcactcttaatgctgaattcctcttttagtgagttgcgacatgctattcgttgtttgtttctcagaagcactaatacatagttatatgcaaattcag
species | Oryza sativa |
transcript | LOC_Os02g42320.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCCTTCTATTTTAGTCGATGAAACATCT GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGEST: gi|27554138|gb|CA998038.1|CA998038
genomic: TGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: GAAATTGCCTTCTATTTTAGTCGATGAAACATCT GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGEST: gi|27578244|gb|CB000939.1|CB000939
genomic: GAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGEST: gi|88288359|gb|CI661564.1|CI661564
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT GTGCAAAAGATTCEST: gi|27576119|gb|CA998813.1|CA998813
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTC
EST: TGCCTTCTATTTTAGTCGATGAAACATCT GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCTAATGGTGTAGTTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaacatcactcttaatgctgaattcctcttttagtgagttgcgacatgctattcgttgtttgtttctcagaagcactaatacatagttatatgcaaattcag
- - - - - - - - - - - - - - AAGAAA