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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCGGCGGGATCGGTGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttccgttccttattctttattgcttgtgcggccaatttgagacttggttgtggcagttatttgatggtattaggatgtatatagagaatgtag...

Basic information

species Oryza sativa
transcript LOC_Os02g40830.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g40830.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G064695_T03 (Zea mays), 5'ss of exon 2
GATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCGGCGGGATCGGTGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttccgttccttattctttattgcttgtgcggccaatttgagac-ttggttgtggcagttatttgatggtattaggatgtatatagagaatgtag
|||||| || |||||||||||||||||||||||||||||||| || || ||  | ||||||||  || ||||||||||| | ||||| || |||||||||||||||   || |  |||  || |  |   || | || ||   |    |  ||  |  |  ||  |  |       | |   |    |  |  |  ||   
GATGGGTAAATACGGGATCAACGTGCCCAGGGGCGCGGCGGCTGGGTCCGTACACGAGGTCAAGGACGCCTTGAAGAACATGTTCCCCAGCGAGAAAGAGgtgatgacgccatagcttcctcatcgtctgttattcgaccccatcattatgttcatcttatcacctcgtgatccaaaatgccagtcgtccattgcttggg-

upper sequence: LOC_Os02g40830.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G094614_T01 (Zea mays), 5'ss of exon 2
GATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCGGCGGGATCGGTGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttccgttccttattctttattgcttgtgcggccaat--ttgagacttggttgtggcagt-tatttgatggtattaggatgtatatagagaatgtag
|||||| || |||||||||||||||||||||||||||||||| || || ||  | ||||||||  || ||||||||||| | ||||| || |||||||||||||||   || |  |||  || |  |   || | || || ||  ||  |      || | ||    |  |  |   |   ||   ||  || |     ||  
GATGGGTAAATACGGGATCAACGTGCCCAGGGGCGCGGCGGCTGGGTCCGTACATGAGGTCAAGGACGCCTTGAAGAACATGTTCCCCAGCGAGAAAGAGgtgatgacgccatagcttcctcatcgtctgttattcgacccatcattatgttcatcttatcgcgtcgtgatccaaaatgccagt-cgtccattgcttgggt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88389916|gb|CI626685.1|CI626685
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCC-TAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88350391|gb|CI622716.1|CI622716
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|163928461|gb|EG715441.1|EG715441
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88294732|gb|CI604604.1|CI604604
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|66913068|gb|CX099916.1|CX099916
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88394702|gb|CI622576.1|CI622576
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88573012|gb|CI664583.1|CI664583
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTNGTTACGAGTCAAATCCTGGCTGGTGGCCGNGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88426486|gb|CI576728.1|CI576728
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|58681651|gb|CK070338.1|CK070338
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88361440|gb|CI605221.1|CI605221
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88693364|gb|CI736939.1|CI736939
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88412220|gb|CI573496.1|CI573496
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|55434355|gb|CV730299.1|CV730299
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88401546|gb|CI588487.1|CI588487
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88401511|gb|CI588452.1|CI588452
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88407435|gb|CI586276.1|CI586276
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88377689|gb|CI605524.1|CI605524
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|58668786|gb|CK057472.1|CK057472
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGACAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88363539|gb|CI618100.1|CI618100
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCCTGGTGGCCGTGGATTGGGAACATT
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGC-TGGTGGCCGTGGATTGGGAACATT
EST: gi|88721277|gb|CI744576.1|CI744576
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGT
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGT
EST: gi|29662328|gb|CB658603.1|CB658603
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88313276|gb|CI594906.1|CI594906
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|58588874|gb|CF987182.1|CF987182
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|4714828|gb|AU055945.1|AU055945
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88301023|gb|CI592203.1|CI592203
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAGATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|29662110|gb|CB658385.1|CB658385
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|38478366|gb|CF962499.1|CF962499
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAGGATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88718253|gb|CI741342.1|CI741342
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88359730|gb|CI622420.1|CI622420
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|58684186|gb|CK072873.1|CK072873
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|58588447|gb|CF986755.1|CF986755
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|33688588|gb|CF316827.1|CF316827
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88729794|gb|CI753304.1|CI753304
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|58594936|gb|CF993244.1|CF993244
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGNCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88391665|gb|CI600854.1|CI600854
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88390790|gb|CI611016.1|CI611016
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88298871|gb|CI567874.1|CI567874
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88728966|gb|CI752476.1|CI752476
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|4880970|gb|AU065269.1|AU065269
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|38477849|gb|CF961982.1|CF961982
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88344882|gb|CI625728.1|CI625728
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|58592643|gb|CF990951.1|CF990951
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88387917|gb|CI588005.1|CI588005
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTTTTCC-TAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATC-TGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88362824|gb|CI614180.1|CI614180
EST:     TGGAGGAGGTCAAAAGCACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|428186|gb|D24334.1|D24334
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTNGTGGCCGTGG
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGG
EST: gi|88721577|gb|CI744876.1|CI744876
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGA
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGA
EST: gi|88314491|gb|CI604975.1|CI604975
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGT-GTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|33794775|gb|CF323267.1|CF323267
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88370572|gb|CI590150.1|CI590150
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88315087|gb|CI610146.1|CI610146
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|27577186|gb|CA999880.1|CA999880
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88402575|gb|CI598802.1|CI598802
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAACAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88398467|gb|CI595868.1|CI595868
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88403716|gb|CI611371.1|CI611371
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGCCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88398778|gb|CI601114.1|CI601114
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88356838|gb|CI619324.1|CI619324
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
EST: gi|88397989|gb|CI585492.1|CI585492
EST:     TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAG                         ATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC
genomic: TGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 64 (upstream exon), 73 (downstream exon)
Score: 73

GATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCGGCGGGATCGGTGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttc ... acaactgcagATAGTTGTTAAGAGTCAAATCCTGGCTGGTGGCCGTGGATTGGGAACATTCAAAAGTGGACTGCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGGGGAAGTACGGGATCAACGTGCCCAGGGGCGCGGCGGCGGGATCGGTGGAGGAGGTCAAAAACACCTTGAAGAACGTCTTCCCTAGTGAGAAAGAGgtgatgtttccgttccttattctttattgcttgtgcggccaatttgagacttggttgtggcagttatttgatggtattaggatgtatatagagaatgtag

- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcggc