1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGAGCGCGCTCATGGCTCGCGTGTACGTGGGGAACCTGGATCCGCGCGTGACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAGGAGgtgtgagattctgctgactctgagctaagaatcactatatatatatattttactccctgtgttgcgtatacttgtttaatgtgcctgcttgttcgtttga...
species | Oryza sativa |
transcript | LOC_Os02g39720.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGAAAACCACCAGGTTTTGCCTTTATTGACTTTGATGAEST: gi|29658266|gb|CB654541.1|CB654541
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAGGAGgtgtgagatt ... ttctatgcagTGTATGGGTTGCTAGAAAACCACCAGGTTTTGCCTTTATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGAAAACCACCAGGTTTTGCCTTTATTGACTTTGATGAEST: gi|29660883|gb|CB657158.1|CB657158
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAGGAGgtgtgagatt ... ttctatgcagTGTATGGGTTGCTAGAAAACCACCAGGTTTTGCCTTTATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGAAAACCACCAGGTTTTGCCTTTATTGACTTTGATGAEST: gi|325493520|gb|JG458044.1|JG458044
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAGGAGgtgtgagatt ... ttctatgcagTGTATGGGTTGCTAGAAAACCACCAGGTTTTGCCTTTATTGACTTTGATGA
EST: GAGTTCCGCGTGTTTGAGGTTCTGAGGAG TGTATGGGTTGCTAGAAAACCACCAGGTTTTGCCTTTATTGACTTTGATGAEST: gi|84117541|gb|CD151308.1|CD151308
genomic: GAGTTCCGCGTGTTTGGGGTTCTGAGGAGgtgtgagatt ... ttctatgcagTGTATGGGTTGCTAGAAAACCACCAGGTTTTGCCTTTATTGACTTTGATGA
EST: ACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAGGAG TGTATGGGTTGCTAGAAAACCACCAGGTTTTGCCTTTATTGACTTTGATGA
genomic: ACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAGGAGgtgtgagatt ... ttctatgcagTGTATGGGTTGCTAGAAAACCACCAGGTTTTGCCTTTATTGACTTTGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGCGCGCTCATGGCTCGCGTGTACGTGGGGAACCTGGATCCGCGCGTGACGGCGCGGGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTGAGGAGgtgtgagattctgctgactctgagctaagaatcactatatatatatattttactccctgtgttgcgtatacttgtttaatgtgcctgcttgttcgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG