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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCAGAGTCTGGTTGCTTGTCCATTGTGGTCCTAGGTGCTTCTGGAGACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgattgtaactagtagcttcttacatagtttggtatactagcttcttccatagttgtcaaacttctgaaagagttgtagtgaaaaagaaataaa...

Basic information

species Oryza sativa
transcript LOC_Os02g38840.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g38840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G031107_T01 (Zea mays), 5'ss of exon 2
GTCTTCAGAGTCTGGTTGCTTGTCCATTGTGGTCCTAGGTGCTTCTGGAGACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgattgtaactagtagcttcttacatagtttggtatactagcttcttccatagttgt-caaacttctgaaagagttgtagtgaaaaagaaataaa---
 |||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||| || ||  | |||||  | ||  ||| || |    ||||    ||||   || ||   | |||||   || |    |||              |      
ATCTTCAGAGTCTGGCTGCTTGTCCATTGTTGTACTAGGCGCTTCTGGAGACCTTGCTAAGAAGAAAACTTTCCCAGCGCTCTTTCACCTTTTCCAGCAGgtaagttaat-atcactagcggttttgtacttaat---atataaagccttcaaacagagaattacaaacaaatgcatagtttgatccatctcttctttggttat

upper sequence: LOC_Os02g38840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA16G06850.1 (Glycine max), 5'ss of exon 2
-GTCTTCAGAGTCTGGTTGCTTGTCCATTGTGGTCCTAGGTGCTTCTGGAGACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaattt-gattgtaactagtagcttcttacatagtttggtatactagcttcttccatagttgtcaaacttctgaaagagttgtagtgaaaaaga-aataaa
 ||      |    |||  ||  || |||||||| || ||||||||||| || |||||||||||||| ||||| || || || || ||||| |  | ||||||||    || | |   | | | | | ||   |||| ||  ||         ||  | |  ||  |||  |         |  |  || ||   |  ||   
TGTGCCTGAAACTGGGTCACTC-TCTATTGTGGTGCTTGGTGCTTCTGGTGATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAGgtaaagcagaatcttggtgg-atcatgttgattagtgtgtgatgtagaacagttgtaaaaatgagaaatattaatgcagatgatcatgcaactaatgatgg-

upper sequence: LOC_Os02g38840.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA19G22690.1 (Glycine max), 5'ss of exon 2
GTCTTCAGAGTCTGGTTGCTTGTCCATTGTGGTCCTAGGTGCTTCTGGAGACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgt-----aattt--gattgtaactagtagcttcttacatagt-ttggtatactagcttcttccatagttgtcaaacttctgaaagagttgtagtgaaaaagaaataaa
  |  | ||  |||| |   | |||||||| || || ||||||||||| ||||||||||||||||| ||||| ||||| || ||  |||| |  |  |||||     ||| |  ||||     ||   |  |     |||   || ||  || |  || ||   | | | |     |  ||||  |     |   | ||         
TGCAACTGAAACTGGGTCACTCTCCATTGTTGTGCTTGGTGCTTCTGGTGACCTTGCTAAGAAGAAGACATTTCCAGCACTTTTCAACCTATACCGTCAGgtttgataatctaagatttgtgttaaaggaataaaggataacctttgtgaaccatgttatttagtggcttttttgttgttgaagaaaacacaaaaagaat--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88416098|gb|CI594210.1|CI594210
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCAC-TCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88411864|gb|CI571356.1|CI571356
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|25798694|gb|CA754655.1|CA754655
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88317248|gb|CI626891.1|CI626891
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAACTCTGGAGAAGTC-ATATATTTGGGTATGCAAGATCAAA
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAA-TCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAA
EST: gi|88304205|gb|CI599893.1|CI599893
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88351991|gb|CI625991.1|CI625991
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|29635730|gb|CB640739.1|CB640739
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88296133|gb|CI667523.1|CI667523
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATG
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATG
EST: gi|88443530|gb|CI596997.1|CI596997
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCACTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88581858|gb|CI699072.1|CI699072
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGT
EST: gi|88354469|gb|CI624859.1|CI624859
EST:     ACCT-GCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88737626|gb|CI761134.1|CI761134
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88302319|gb|CI668165.1|CI668165
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88365346|gb|CI679980.1|CI679980
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGC
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGC
EST: gi|88403767|gb|CI611422.1|CI611422
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCA
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCA
EST: gi|29616736|gb|CB621748.1|CB621748
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTATTTCAGCAG                         GGATTTCTACTATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88350091|gb|CI622022.1|CI622022
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88290542|gb|CI666915.1|CI666915
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTT
EST: gi|88362870|gb|CI614226.1|CI614226
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGA
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGA
EST: gi|88395088|gb|CI609404.1|CI609404
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88362236|gb|CI608627.1|CI608627
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88444015|gb|CI589643.1|CI589643
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88403178|gb|CI570919.1|CI570919
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCA-GATCAA-T
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88301179|gb|CI594705.1|CI594705
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGG
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGG
EST: gi|88578590|gb|CI687528.1|CI687528
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACA
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACA
EST: gi|88766204|gb|CI775294.1|CI775294
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAA
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAA
EST: gi|88333818|gb|CI643850.1|CI643850
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGG
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGG
EST: gi|88421751|gb|CI621395.1|CI621395
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88360262|gb|CI611981.1|CI611981
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88358895|gb|CI619399.1|CI619399
EST:     ACCTTGCTAACAAGAAAACATTCC-AGCGCTGTT-CACCTCTTTCAGCAG                         GGATTTCTACCAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAA
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTAC-AATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAA
EST: gi|88763336|gb|CI772797.1|CI772797
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTG
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTG
EST: gi|88394821|gb|CI622695.1|CI622695
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88445341|gb|CI587235.1|CI587235
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88403957|gb|CI601367.1|CI601367
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTC-ATATATTTGG
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGG
EST: gi|88378906|gb|CI681728.1|CI681728
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAA
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAA
EST: gi|88345041|gb|CI625887.1|CI625887
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCCAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88349099|gb|CI678067.1|CI678067
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88761626|gb|CI771182.1|CI771182
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAA
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAA
EST: gi|88316741|gb|CI624183.1|CI624183
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT
EST: gi|88370623|gb|CI590201.1|CI590201
EST:     ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAG                         GGATTTCTACACTCTGGCGAAGTCCATATATTTGCCTATGCACGATCAAAT
genomic: ACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgat ... gtgttgatagGGATTTCTACAATCTGGAGAAGTCCATATATTTGGGTATGCAAGATCAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTTCAGAGTCTGGTTGCTTGTCCATTGTGGTCCTAGGTGCTTCTGGAGACCTTGCTAAGAAGAAAACATTCCCAGCGCTGTTTCACCTCTTTCAGCAGgtaatttgattgtaactagtagcttcttacatagtttggtatactagcttcttccatagttgtcaaacttctgaaagagttgtagtgaaaaagaaataaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT