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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTGGTTATTATGAGGAGAAGAAGGCACTTTTGATTCTCAGAGATGTATGCAATGCAGTTTTTGCTATGCATGGTCAGTCACCACCAATTGCACATAGgtatgttgaaaaaaaaaattaaagtatcaaagatagttatatctcatcgttgctagaacgttttatgtgcttttatcaagtatttgaaagtacgttcctg...

Basic information

species Oryza sativa
transcript LOC_Os02g37880.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g37880.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G026043_T01 (Zea mays), 5'ss of exon 2
GTACTGGTTATTATGAGGAGAAGAAGGCACTTTTGATTCTCAGAGATGTATGCAATGCAGTTTTTGCTATGCATGGTCAGTCACCACCAATTGCACATAGgtatgttgaaaaaaaaa-------attaaagtatcaaagatagttatatctcatcgttgctagaacgttttatgtgcttttatcaagtatttgaaagtacgttcctg
||| |||||| ||||||||||||||||  ||||||||| |||||||||| |||||||| || |||||||||||||| || ||||| ||||||||||||||||||| |       |          ||  | |||  |     | | | ||  ||   ||| | |    |   | |  |||| |  ||| |   | | || ||  |  
GTAGTGGTTACTATGAGGAGAAGAAGGTGCTTTTGATTTTCAGAGATGTCTGCAATGCTGTCTTTGCTATGCATGGACAATCACCGCCAATTGCACATAGgtatgatagtgtttatgctgttctgtttcactattcagacggggtttttcaaattaatgcaaaa----tgagtattgttttctttagtgtaccata-tatgtatc--

upper sequence: LOC_Os02g37880.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G051079_T01 (Zea mays), 5'ss of exon 2
GTACTGGTTATTATGAGGAGAAGAAGGCACTTTTGATTCTCAGAGATGTATGCAATGCAGTTTTTGCTATGCATGGTCAGTCACCACCAATTGCACATAGgtatgttgaaaaaaaaaat-taaagtatcaa-agatagttatatctcatcgttgctagaacgttttatgtgcttttatcaagtatttgaaagtacgttcctg
||| |||||| ||||||||||||||||  ||||| ||| |||||||||| |||||||| || ||||| |||||||| || ||||  ||||||||||||||||||| |       |   | |   || |||  |   |||||  | |  |      |  |  |    || |    | | | || |  ||  |||   ||  | 
GTAGTGGTTACTATGAGGAGAAGAAGGTGCTTTTAATTTTCAGAGATGTCTGCAATGCTGTCTTTGCCATGCATGGACAATCACTGCCAATTGCACATAGgtatggtagtgtttatgctgttctgtctcactatccagttagttttttttccaaattaattggca-atttctggtaaactagaaaatgggagttatttttt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29615146|gb|CB620159.1|CB620159
EST:     GCAATGCAGTTTTTGCTATGCATGGTCANGTCACCACCAATTGCACATAG                         GGATCTGAAAGCTGAAAATGTTCTTCTTGGATTAGACGGTGCATGGAAATT
genomic: GCAATGCAGTTTTTGCTATGCATGGTCA-GTCACCACCAATTGCACATAGgtatgttgaa ... gattctttagGGATCTGAAAGCTGAAAATGTTCTTCTTGGATTAGACGGTGCATGGAAATT
EST: gi|58676564|gb|CK065251.1|CK065251
EST:     TGCAATGCAGTTTTTGCTATGCATGGTCAGTCACCACCAATTGCACATAG                         GGATCTGAAAGCTGAAAATGTTCTTCTTGGATTAGACGGTGCATGGAAATT
genomic: TGCAATGCAGTTTTTGCTATGCATGGTCAGTCACCACCAATTGCACATAGgtatgttgaa ... gattctttagGGATCTGAAAGCTGAAAATGTTCTTCTTGGATTAGACGGTGCATGGAAATT