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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTATCTTTGTCAGTTACATATAATGAGCCTTGGTTCACAAACACTAAATATTTCTGGGTTGGACCTGGTGACCAGGTTTGGCCTGACCAAAAGATAAAgtaatacgaattggtcctttattgcttcatgttcttactagttctcaggctggtgtatatctaacaattttccccttatctacag

Basic information

species Oryza sativa
transcript LOC_Os02g37080.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g37080.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G444643_T01 (Zea mays), 5'ss of exon 3
TTTTATCTTTGTCAGTTACATATAATGAGCCTTGGTTCACAAACACTAAATATTTCTGGGTTGGACCTGGTGACCAGGTTTGGCCTGACCAAAAGATAAAgtaatacgaattggtcc------tttattgcttcatgttcttactagttctcaggctggtgtatatctaacaattttccccttatctacag
||||||||||||| || ||||||||||||||||||||||| || || | |||||| ||||| ||||| || || ||||| ||||||||||||||||||||||||| |  ||   |||       || ||| |  |  |||||| |  ||||||||||||| || ||||||   ||   ||||||    |||
TTTTATCTTTGTCTGTCACATATAATGAGCCTTGGTTCACCAATACCAGATATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGACCAAAAGATAAAgtaattcttatccttccactgtactttttgatagaaattcttaatgcttctcaggctggtataaatctaatggttgcacccttactctcag

upper sequence: LOC_Os02g37080.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G170868_T01 (Zea mays), 5'ss of exon 2
TTTTATCTTTGTCAGTTACATATAATGAGCCTTGGTTCACAAACACTAAATATTTCTGGGTTGGACCTGGTGACCAGGTTTGGCCTGACCAAAAGATAAAgtaatacgaattggtcc--tttattgcttcatg----ttcttactagttctcaggctggtgtatatctaacaattttccccttatctacag
||||| ||||||| ||||||||||| |||||||||||||| || || | |||||| ||||| ||||| || || ||||| |||||||| |||||||||||||||| |  ||   |||  | || |  || ||     |||| ||| ||| |||  ||| | || ||||||   || | ||||||    |||
TTTTAGCTTTGTCGGTTACATATAACGAGCCTTGGTTCACCAATACCAGATATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGATCAAAAGATAAAgtaattctgatccttccactgtactttttaataaaaattctcactggttttcaatctgctctagatctaatggttgtgcccttactctcag

upper sequence: LOC_Os02g37080.2 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 2
TTTTATCTTTGTCAGTTACATATAATGAGCCTTGGTTCACAAACACTAAATATTTCTGGGTTGGACCTGGTGACCAGGTTTGGCCTGACCAAAAGATAAAgtaa------tacgaattggtcctttattgcttcatgttcttactagttctcaggctggtgtatatctaacaattttccccttatctacag------------------------------------------------------
|| || || | || || || ||| ||||||||||||| || ||||| |||||||| ||||| || |||||| | || || |||||||||||| |||| ||||||       || |      | || |  ||||   ||| |||  | ||||     | ||||     ||||  |||| || ||| ||                                                          
TTCTAGCTCTATCTGTAACTTATGATGAGCCTTGGTTTACTAACACAAAATATTTTTGGGTAGGGCCTGGTAATCAAGTCTGGCCTGACCAACAGATTAAgtaaggttttcacaagccatacattaaaagcttatggttgtta--aattctggcttttgtgttagcttaac--tttttcctttagctgtgctttgaatagctcagcctatgaagtcagttgagtgatgatatattgcaaattcag