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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGTCTTCTACACCGGGAGGGCCCCCCGCGGCGGCAAGACCGGATGGGTCATGCACGAGTACCGCATCCACGGCAAGCACGCCGCCGCCAATTCCAAGgtacgtacgtgagcgttgatttggttgcacgcgcgcgcgttcgtgtgtgccatgtcgcgatctgatgggtggtctggttggttgggtgcagcag

Basic information

species Oryza sativa
transcript LOC_Os02g36880.4
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g36880.4 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G898290_T02 (Zea mays), 5'ss of exon 3
GCTCGTCTTCTACACCGGGAGGGCCCCCCGCGGCGGCAAGACCGGATGGGTCATGCACGAGTACCGCATCCACGGCAAGCACGCCGCCGCCAATTCCAAGgtacgtacgtgagcgttgatttggttgcacgcgcgcgcgttcgtgtgtgccatgtcgcgatctgatgggtggtctggttggttgggtgcagcag----------------------------------------------------------------------------------------
                                  ||||||||||| ||||||||||||||||||||| |||||||||||||||||  |  ||    |    | |   |||  |    ||  |||     |    | ||   |    ||     |   |  | |  |||  | |   |    |    | || |                                                                                          
---------------------------------AGGCAAGACCGGCTGGGTCATGCACGAGTACCGCCTCCACGGCAAGCACGCCAGCAGCAGCCGCCTCATGCCGTCGTCGGT-CAGAGCTGGCGCGTCAAAGgtgccgcccgcagtatatagcttcagtttattggtcgatggagagcatattctccaacgaccgagtggcgtgtggatccgtctaacctcgcttgttcatctttatgcgtcctcttggccgcatccattccatggttgggtactcgcag

upper sequence: LOC_Os02g36880.4 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G146380_T01 (Zea mays), 5'ss of exon 1
GCTCGTCTTCTACACCGGGAGGGCCCCCCGCGGCGGCAAGAC-CGGATGGGTCATGCACGAGTACCG-CATCCA--CGGCAAGCAC-GCCGCCGCCAATTCCAAGgtacgtacgtgagcg--ttgatttggttgcacgcgcgcgcgt-tcgtgtgtg---ccatgtcgcgatctgatgggtg-gtctggttggttggg-tgcagcag-------------------------------------------------------------------------
       |  | |||  | |  ||| ||   |   ||| | | | |  |   |  | |  ||   || | |||   || |   ||  || | |||    || ||||||||||||        ||  ||| |||||  ||||| || | |   ||      | ||    | |||    || || |  |||||||| | |   ||||                                                                           
-----GGTCATGCACGAGTACCGCCTCCAAGGCAAGCACGCCGCCGCCGCCACCAGTAGCAGCCTCGTCGTCCCGTCGTCGGTCAGAGCTGGCGCGTCGTCAAAGgtacgtacggtgctagcttttttttgttgcttgcgcgtgcatgttacgtaccggtcgatccatccatccatcggttgcggttggttggtcgagacacagcgagtggcgtgtggatccgtctaactccatctgtgctgtgtgtgtgccttgccgctgcactacatgctggcagcag