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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGTCTTCTACACCGGGAGGGCCCCCCGCGGCGGCAAGACCGGATGGGTCATGCACGAGTACCGCATCCACGGCAAGCACGCCGCCGCCAATTCCAAGgtacgtacgtgagcgttgatttggttgcacgcgcgcgcgttcgtgtgtgccatgtcgcgatctgatgggtggtctggttggttgggtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g36880.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g36880.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G898290_T02 (Zea mays), 5'ss of exon 3
GCTCGTCTTCTACACCGGGAGGGCCCCCCGCGGCGGCAAGACCGGATGGGTCATGCACGAGTACCGCATCCACGGCAAGCACGCCGCCGCCAATTCCAAGgtac----gtacgtgagcgttgatttggttgcacgcgcgcgcgttcgtgtgtg---ccatgtcgcgatctgatgggtggtctggtt------ggttgggtgcag------------------------------------------------------------------------------
                                  ||||||||||| ||||||||||||||||||||| |||||||||||||||||  |  ||    |    | |    ||  || || | ||    | |   | | ||   |    || | |     ||  |        |||||   |  |  |       |   | |||  |                                                                              
---------------------------------AGGCAAGACCGGCTGGGTCATGCACGAGTACCGCCTCCACGGCAAGCACGCCAGCAGCAGCCGCCTCATGCCGTCGTCGGTCAGAGCTGGCGCG-TCAAAGgtgccgcccgcagtatatagcttcagtttattggtcgatggagagcatattctccaacgaccgagtggcgtgtggatccgtctaacctcgcttgttcatctttatgcgtcctcttggccgcatccattccatggttgggtactcgcag

upper sequence: LOC_Os02g36880.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G146380_T01 (Zea mays), 5'ss of exon 1
GCTCGTCTTCTACACCGGGAGGGCCCCCCGCGGCGGCAAGAC-CGGATGGGTCATGCACGAGTACCG-CATCCA--CGGCAAGCAC-GCCGCCGCCAATTCCAAGgtacgtacgtgagcg--ttgatttggttgcacgcgcgcgcgt-tcgtgtgtg---ccatgtcgcgatctgatgggtg-gtctggttggttggg-tgcag----------------------------------------------------------------------------
       |  | |||  | |  ||| ||   |   ||| | | | |  |   |  | |  ||   || | |||   || |   ||  || | |||    || ||||||||||||        ||  ||| |||||  ||||| || | |   ||      | ||    | |||    || || |  |||||||| | |   |||                                                                            
-----GGTCATGCACGAGTACCGCCTCCAAGGCAAGCACGCCGCCGCCGCCACCAGTAGCAGCCTCGTCGTCCCGTCGTCGGTCAGAGCTGGCGCGTCGTCAAAGgtacgtacggtgctagcttttttttgttgcttgcgcgtgcatgttacgtaccggtcgatccatccatccatcggttgcggttggttggtcgagacacagcgagtggcgtgtggatccgtctaactccatctgtgctgtgtgtgtgccttgccgctgcactacatgctggcagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|426774|gb|D22845.1|D22845
EST:     TCATGCACGAGTACCGCATCCACGGCAAGCACGCCGCCGCCAATTCCAAG                         CAGGATCAGGAGTTGGTNCTGTTCAGGGTGTTCAAGAAGAGCCTCGAGCT
genomic: TCATGCACGAGTACCGCATCCACGGCAAGCACGCCGCCGCCAATTCCAAGgtacgtacgt ... ttgggtgcagCAGGATCAGGAGTGGGTGCTGTGCAGGGTGTTCAAGAAGAGCCTCGAGCT