1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCGGCCGGTGGGATCACGCCGGCGATGTTCGGAGCGCCGGTGACCGACCTGGAGGCCGAGGATCTGACCAAGAGgtgagggattattcgcgccctgatccgctcgatccgcgcctttgcccgttgccgtgccgtgtatgctcgtgcactctgcgcgcgccgggtgattgatttc...
species | Oryza sativa |
transcript | LOC_Os02g36500.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGTTCGGAGCGCCGGTGACCGACCTGGAGGCCGAGGATCTGACCAAGAG GAAAATGTGCTCGGGCTCAAAGATGAAGGAAATGACCGGGAGTGGAATATTEST: gi|58601546|gb|CK012074.1|CK012074
genomic: ATGTTCGGAGCGCCGGTGACCGACCTGGAGGCCGAGGATCTGACCAAGAGgtgagggatt ... ctggtggcagGAAAATGTGCTCGGGCTCAAAGATGAAGGAAATGACCGGGAGTGGAATATT
EST: ATGTTCGGAGCGCCGGTGACCGACCTGGAGGCCGAGGATCTGACCAAGAG GAAAATGTGCTCGGGCTCAAAGATGAAGGAAATGACCGGGAGTGGAATATT
genomic: ATGTTCGGAGCGCCGGTGACCGACCTGGAGGCCGAGGATCTGACCAAGAGgtgagggatt ... ctggtggcagGAAAATGTGCTCGGGCTCAAAGATGAAGGAAATGACCGGGAGTGGAATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCCGGTGGGATCACGCCGGCGATGTTCGGAGCGCCGGTGACCGACCTGGAGGCCGAGGATCTGACCAAGAGgtgagggattattcgcgccctgatccgctcgatccgcgcctttgcccgttgccgtgccgtgtatgctcgtgcactctgcgcgcgccgggtgattgatttc
- - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgccgg