1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAGAGGCAGTGGTTCAGCTGGATGCGGAGAGGGCATCACTCTTCTATGCGGAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgtcgaaagacttgtgtattttgttccttgcttaagtcctcacagtcacaggctatagtgaatcgtttcgacagtgaggccatatcaacatga...
species | Oryza sativa |
transcript | LOC_Os02g35700.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAG TGGTCCAGTTCTCGTTATGEST: gi|56148082|gb|AU175046.2|AU175046
genomic: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgt ... tgttctttagTGGTCCAGTTCTCGTTATG
EST: GA-CATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAG TGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGEST: gi|87014579|gb|CI284091.1|CI284091
genomic: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgt ... tgttctttagTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTG
EST: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAG TGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGEST: gi|86850720|gb|CI309532.1|CI309532
genomic: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgt ... tgttctttagTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTG
EST: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAG TGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGEST: gi|86533331|gb|CI173537.1|CI173537
genomic: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgt ... tgttctttagTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTG
EST: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAG TGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTGEST: gi|88468942|gb|CI696950.1|CI696950
genomic: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgt ... tgttctttagTGGTCCAGTTCTCGTTATGATTCTGGAAAGGCCCGATGCCATCTCACACTG
EST: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAG TGGTCCAGTTCTCGTTATEST: gi|88463367|gb|CI695828.1|CI695828
genomic: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgt ... tgttctttagTGGTCCAGTTCTCGTTAT
EST: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAG TGGTCCAGTTCT
genomic: GAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgt ... tgttctttagTGGTCCAGTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGGCAGTGGTTCAGCTGGATGCGGAGAGGGCATCACTCTTCTATGCGGAGCATTCTGGGAGAAGCTTCTTTGACAGTCTGGTGAAGTATATGACAAGgtacctttgtcgaaagacttgtgtattttgttccttgcttaagtcctcacagtcacaggctatagtgaatcgtttcgacagtgaggccatatcaacatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC