1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATGTGGAGAAGTTCTACCGGCAGTGCGACCCCGgtgaggctagctccccgatgttcatgtgtttgagctaaattttttgtgtttggggatgtgaggctttggtcttttttgcggctgctctggagtcgctttt...
species | Oryza sativa |
transcript | LOC_Os02g35600.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTGGAGAAGTTCTACCGGCAGTGCGACCCCG AGAAAGAGAACCTGTGCCTTTATGGATTGCCCAATGAGACCTGGGACGTGAEST: gi|58586106|gb|CF984414.1|CF984414
genomic: TGTGGAGAAGTTCTACCGGCAGTGCGACCCCGgtgaggctag ... attttttcagAGAAAGAGAACCTGTGCCTTTATGGATTGCCCAATGAGACCTGGGACGTGA
EST: ATGTGGAGAAGTTCTACCGGCAGTGCGACCCCG AGAAAGAGAACCTGTGCCTTTATGGATTGCCCAATGAGACCTGGGACGTGAEST: gi|5003799|gb|AU068948.1|AU068948
genomic: ATGTGGAGAAGTTCTACCGGCAGTGCGACCCCGgtgaggctag ... attttttcagAGAAAGAGAACCTGTGCCTTTATGGATTGCCCAATGAGACCTGGGACGTGA
EST: ATGTGGAGAAGTTCTACCGGCAGTGCGACCCCG AGAAAGANAACCTGTGCCTTTATGGATTNCCCAATGAGACCTGGGACGTNA
genomic: ATGTGGAGAAGTTCTACCGGCAGTGCGACCCCGgtgaggctag ... attttttcagAGAAAGAGAACCTGTGCCTTTATGGATTGCCCAATGAGACCTGGGACGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGGAGAAGTTCTACCGGCAGTGCGACCCCGgtgaggctagctccccgatgttcatgtgtttgagctaaattttttgtgtttggggatgtgaggctttggtcttttttgcggctgctctggagtcgctttt
- GTGGAG
- TGGAGA
- - GGAGAA
- - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcggctg