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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcactctgctctccttgattggtttcgatctcattacaaaatggattgcgtaaacaggaaattgggtgattgttttaatccctcgtttaattgg...

Basic information

species Oryza sativa
transcript LOC_Os02g34460.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G065237_T01 (Zea mays), 5'ss of exon 2
ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgt-tggctcactctgctctccttgattggtttcgatctcattacaaaatggattgcgtaaacaggaaattgggtgattgttttaat-ccctcgtttaattgg---
||||||| |||||||||| | |||||||||||||||||||||||| | ||| |||  ||||   ||| |  |          |  || |||      | | || ||    |  | |  ||   |||  |   | |    |||| | | | |   
ATCATCCTCAAGAAGAACAGCAATGAGATCTGCAAGTACCTCTTCAAGGgtatggtccactagactcgcagtagggtaacctgggctgattg----gttgttt-cgccttctaggaggtgacagatcttcaaattattttcgtattactaggag

upper sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G043737_T01 (Zea mays), 5'ss of exon 2
ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcactctgctctccttgattggt--ttcgatctcattacaaaatggattgcgtaaacaggaaattgggtgattg--ttttaatccctcgtttaattgg
|||||||||||||||||||| |||||||||||||||||||||||| | |||  |       || ||  || || | |   |  | |  | |      || | |||  | | |    |    |||||  |   || ||    |  |   ||   
ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGgtatgtggttcttggtccactagactcgcagtagggtaacctgggctgattggttgtttcaccttctagg-aggtgacaggtcttcaaattattttcgtat---

upper sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G050925_T01 (Zea mays), 5'ss of exon 2
ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcactctgctctccttgattggtttcgatctca-ttacaa-aatggattgcgtaaacaggaaattgggtgattgttttaatccctcgtttaattgg
|||||||||||||||||||| |||||||||||||||||||||||| | |||  ||      |  ||  ||  | | |        | | || |     | | |||  |        |   ||| ||    || || |  |    | |||  
ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCAAGGgtatgcgattattcgtccgctaaactcgcagtagggtaacttgcgttggttggttgtttcgctttctaggaggg-gacgtcttcaaactgtttccttatta-

upper sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G459828_T01 (Zea mays), 5'ss of exon 2
ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgt-tggctcactctgctctccttgattggtttcgatctcattacaaaatggattgcgtaaacaggaaattgggtgattgttttaatccctcgtttaattgg
|||||||||||||||||||| |||||||||||||||||||||||| | ||| |||  ||||   ||| |  |          |  || |||      | | || ||    |  | |  ||   |||  ||  |||   |           
ATCATCCCCAAGAAGAACCGCAATGAGATCTGCAAgtacctcttcaagggtatggtccactagactcgcagtagggtaacctgggctgattg----gttgttt-cgccttctaggaggtgacagatc-ttcaaattatttt---------

upper sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA11G02410.3 (Glycine max), 5'ss of exon 2
ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggct------cactctgctctccttgattggttt-cgatctcattacaaaatggattgcgtaaacaggaaattgggtgattgttttaatccctcgtttaattgg
||||| ||| |||||||||| || ||||||||||| |||||||||||||||  | |      || | |  ||||||    || ||| |  |    ||| ||| || |  | ||         |||  | |   ||||     | | |   |     
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagttaacattgttgtctcctcttgtgctttacagttgtgtta-aaattgtaaggtgtgtgtgtttgattcagagggagttt----gctttgcgaag----

upper sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA05G37470.1 (Glycine max), 5'ss of exon 2
ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcactc-tgctctccttgattggtttcgatctcattacaaaatggattgcgtaaacaggaaattgggtgattgttttaatccctcgtttaattgg
||||||||  |||||||||| || ||||||||||| ||||||||||||||| ||  |  |     |   |  || |  | |   |    |      | |  | |   ||  | |||  |      | |||    |   | ||  |     
ATCATCCCGGAGAAGAACCGCAAGGAGATCTGCAAATACCTCTTCCAAGgtaggtgccttagcatttatcacgaatcatcttcgttcgttagggttacgtctcgttgaacaatgaatcttacctttcgttggtgtttatggtgcag----

upper sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA08G02070.1 (Glycine max), 5'ss of exon 2
ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcactctgctctccttgattggtttcgatctcattacaaaatggattgcgtaaacaggaaattgggtgattgttttaatccctcgtttaattgg
||||| ||  |||||||||| || ||||||||||| ||||||||||||||| ||  |  |    | || |||   |||| || |||| ||  | |||| ||        |       |   || | | |  |                 
ATCATTCCTGAGAAGAACCGCAAGGAGATCTGCAAATACCTCTTCCAAGgtaggtgccttagaatttcattgg--ggttacg-tctcgttgaagaatgaatcttaccttcttttttcttaatg-tcggtgcag----------------

upper sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA11G02410.2 (Glycine max), 5'ss of exon 2
ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcactctgctctccttgattggtttcgatctcattacaaaatggattgcgtaaacaggaaattgggtgattgttttaatccctcgtttaattgg
||||| ||| |||||||||| || ||||||||||| |||||||||||||||  | |     |    |  |||  |  | | |  ||  |||||       ||| || || |    |  | |||  ||||| | ||              
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgttagt--taacattgttgtctcctcttgtgct--ttacag------ttgtgttaaaattgtaaggtgtgtgtgtttgattcag------------

upper sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA01G43110.1 (Glycine max), 5'ss of exon 2
ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcactctgctctccttgattggtttcgatctcattacaaaatggattgcgtaaacaggaaattgggtgattgttttaatccctcgtttaattgg
||||| ||| |||||||||| || ||||||||||| |||||||||||||||  | |      | |  | |||  |  | | |  ||  ||||      | ||| ||  | |    |  | ||| ||| || |                 
ATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGgtccgtta-----gttaacattgtctcctcttgtgct--ttac------ggttgtgtttaaattgtaacgtgtgtttgattcag----------------

upper sequence: LOC_Os02g34460.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv16s0050g01160.t01 (Vitis vinifera), 5'ss of exon 2
ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttgg-ctcactctgct--------ctccttgattggtttcgatctcattacaaaatggattgcgtaaa--caggaaattgggtgattgttttaatccctcgtttaattgg
|| |||||| ||||||| ||||  ||||||| |||||||||||||||||||| | |||||||  ||         | ||||||| |||| | | |  || |    | |  | |  | |  | | | |   |  |||||    ||| |   |         
ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctcactcctctacttgcgtttacttgatttgttttgttgttttttcttgtttgggtaccgagaatctgtagaaaagaggattgg--aaattctggg---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88422621|gb|CI571603.1|CI571603
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88725311|gb|CI748570.1|CI748570
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|58586656|gb|CF984964.1|CF984964
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88398335|gb|CI588223.1|CI588223
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88363743|gb|CI609100.1|CI609100
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTAAAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|25800452|gb|CA756413.1|CA756413
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88444819|gb|CI696249.1|CI696249
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88314115|gb|CI602447.1|CI602447
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|163929239|gb|EG712692.1|EG712692
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88387154|gb|CI577940.1|CI577940
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88329122|gb|CI658784.1|CI658784
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|11863303|gb|AU065659.2|AU065659
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88580666|gb|CI697610.1|CI697610
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|86899170|gb|CI298075.1|CI298075
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|117232299|gb|CT860043.1|CT860043
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88414633|gb|CI698742.1|CI698742
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|4879414|gb|AU063713.1|AU063713
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|163926015|gb|EG712319.1|EG712319
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88732344|gb|CI755521.1|CI755521
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGNAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|55413805|gb|CV726181.1|CV726181
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGTACTTCTATTTGGCAAAACACCCACAG
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGG-ACTACAATTTGGCAAAACACCCACAG
EST: gi|58690564|gb|CK079251.1|CK079251
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88343960|gb|CI638695.1|CI638695
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|58665575|gb|CK054261.1|CK054261
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|3090519|gb|C93506.1|C93506
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCNAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88426462|gb|CI576704.1|CI576704
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88588548|gb|CI706370.1|CI706370
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88426391|gb|CI576633.1|CI576633
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88356652|gb|CI617735.1|CI617735
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
EST: gi|88330762|gb|CI636770.1|CI636770
EST:     ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAG                         AGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA
genomic: ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 49 (upstream exon), 72 (downstream exon)
Score: 32

ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcac ... tgcatcatagAGGGGGTTTTGTACGCCAAGAAGGACTACAATTTGGCAAAACACCCACAGATTGATGTGCCAAACCTTCAGGTCATCAAGCTCATGCAGAGCTTCAAGTC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCATCCCCAAGAAGAACCGGAATGAGATCTGCAAGTACCTCTTCCAAGgttggctcactctgctctccttgattggtttcgatctcattacaaaatggattgcgtaaacaggaaattgggtgattgttttaatccctcgtttaattgg

- - - -  AAGAAG
- - - - - - AAGAAC
- - - - - - - - - - - - GAGATC