1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGAGGCAACTGATAAGCACGGCGATTGACGTTTCTCGGAGCCGCGCTGACTCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGGgtgagagactgggagttgataaggaaattgccacttttggtacattttctctgtcttacatgtgtctcactaatgttgaag
species | Oryza sativa |
transcript | LOC_Os02g32610.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGG GGGTTCCGTATCATCTACCGAAGAACATGAACTGTGTCCCCGGTGGAGAGAEST: gi|29675289|gb|CB671564.1|CB671564
genomic: TCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGGgtgagagact ... aatgttgaagGGGTTCCGTAGCATCTACCGAAGAACATGAACTGTGTCCCCGGTGGAGAGA
EST: TCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGG GGGTTCCGTAGCATCTACCGAAGAACATGAACTGTGTCCCCGGTGGAGAGAEST: gi|29660722|gb|CB656997.1|CB656997
genomic: TCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGGgtgagagact ... aatgttgaagGGGTTCCGTAGCATCTACCGAAGAACATGAACTGTGTCCCCGGTGGAGAGA
EST: TCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGG GGGTTCCGTAGCATCTACCGAAGAACATGAACTGTGTCCCCGGTGGAGAGAEST: gi|29680442|gb|CB676717.1|CB676717
genomic: TCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGGgtgagagact ... aatgttgaagGGGTTCCGTAGCATCTACCGAAGAACATGAACTGTGTCCCCGGTGGAGAGA
EST: TCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGG GGGTTCCGTAGCATCTACCGAAGAACATGAACTGTGTCCCCGGTGGAGAGAEST: gi|29615687|gb|CB620699.1|CB620699
genomic: TCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGGgtgagagact ... aatgttgaagGGGTTCCGTAGCATCTACCGAAGAACATGAACTGTGTCCCCGGTGGAGAGA
EST: TCAAGGGAAANNNNNNNNCGCCTTGCTGGCATTGTGTCCTCAAAGATGGG GGGTTCCGTTGCGTCTACCGAAGAACATGAACTGTGTCCCCGGTGGAGAGAEST: gi|29678549|gb|CB674824.1|CB674824
genomic: TCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGGgtgagagact ... aatgttgaagGGGTTCCGTAGCATCTACCGAAGAACATGAACTGTGTCCCCGGTGGAGAGA
EST: TCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGG GGGTTCCGTAGCATCTACCGAAGAACATGAACTGTGTCCCCGGTGGAGAGA
genomic: TCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGGgtgagagact ... aatgttgaagGGGTTCCGTAGCATCTACCGAAGAACATGAACTGTGTCCCCGGTGGAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGGCAACTGATAAGCACGGCGATTGACGTTTCTCGGAGCCGCGCTGACTCAAGGGAAATCACCACTCGCCTTGCTGGCATTGTGTCCTCAAAGATGGGgtgagagactgggagttgataaggaaattgccacttttggtacattttctctgtcttacatgtgtctcactaatgttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG