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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGACTCATGGGCGACTGGGTTATAGGAGCACTGATCAACATTGTGGGGAGTGTTGCCATAAACTTTGGTACCAACCTTCTGAAATTGGGCCATGATCAGgtgcatatgacatctctgaattggactattagttactttttactttatccctagtggaattaatctgggttaccaacttaccatatgacctacaaccttt...

Basic information

species Oryza sativa
transcript LOC_Os02g31874.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 2
CTGACTCATGGGCGACTGGGTTATAGGAGCACTGATCAACATTGTGGGGAGTGTTGCCATAAACTTTGGTACCAACCTTCTGAAATTGGGCCATGATCAGgtgcatatgacat--ctctgaattggactattagttactttttactttatccctagtggaattaatctgggttaccaacttaccatatgacctacaaccttt
 ||| |||||||||||||| ||||||| ||  |||| ||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||  | || ||||   ||||| |||  ||  | ||  ||  ||    ||| | |  |  |  || ||  |   |   |   |  | |  |   |        
TTGATTCATGGGCGACTGGATTATAGGGGCGTTGATAAACATCGTGGGGAGTGTTGGCATAAACTTTGGTACCAACCTTCTGAAGTTGGGCCATGATCAGgtagacattacatgtttctgatttgtgctccttgtccctacttctaatatacttcatatatgtattccagtcaaaagatcaaggagagcatacatgtggg--

upper sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 2
CTGACTCATGGGCGACTGGGTTATAGGAGCACTGATCAACATTGTGGGGAGTGTTGCCATAAACTTTGGTACCAACCTTCTGAAATTGGGCCATGATCAGgtgcatatgacat--ctctgaattggactattagttactttttactttatccctagtggaattaatctgggttaccaacttaccatatgacctacaaccttt
 |||||||||||||| ||| ||||||| ||  |||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| | ||   | |||||||  ||  | |||  |  ||    ||| | |  |  |  |  ||  |  |   ||  |     |  || ||||      
TTGACTCATGGGCGATTGGATTATAGGGGCGTTGATAAACATCGTGGGAAGTGTTGCCATAAACTTTGGTACTAACCTTCTGAAGTTGGGCCATGATCAGgtggatattatatgtttttgaattgtgctccttgttcttacttgtaatatacttcatatatgtgttccag--tgaaaagatcaaggagaacatacatgtggg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58606436|gb|CK034469.1|CK034469
EST:     GTGTTGCCATAAACTTTGGTACCAACCTTCTGAAATNGGGCCATGATCAG                         AGAGAGAAGCTTTCGACAACCAACAACAATCAAGGCAATGACAAATTTGTT
genomic: GTGTTGCCATAAACTTTGGTACCAACCTTCTGAAATTGGGCCATGATCAGgtgcatatga ... ttattattagAGAGAGAAGCTTTCGACAACCAACAACAATCAAGGCAATGACAAATTTGTT