1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATGTGGAAGAAATGAGGAACTGTTATGATGGCTTCATTTCAGCAGCAGCTGCTACAACGAATGGCGTATATGgtacctcctgtttctaaattctaatgcttaacatggtttctgtcaacagttgatagcatgtttgtctatacatcatttcttaagttgatcatagtgtaatattgtgcag
species | Oryza sativa |
transcript | LOC_Os02g31080.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTATGATGGCTTCATTTCAGCAGCAGCTGCTACAACGAATGGCGTATATG AGTTTGCTGAGEST: gi|117238143|gb|CT862081.1|CT862081
genomic: TTATGATGGCTTCATTTCAGCAGCAGCTGCTACAACGAATGGCGTATATGgtacctcctg ... tattgtgcagAGTTTGCTGAG
EST: TTATGATGGCTTCATTTCAGCAGCAGCTGCTACAACGAATGGCGTATATG AGTTTGCTGAGGCTTTAGAGGAACTGGGAAGTTGCTTACTTGCAAAACCTG
genomic: TTATGATGGCTTCATTTCAGCAGCAGCTGCTACAACGAATGGCGTATATGgtacctcctg ... tattgtgcagAGTTTGCTGAGGCTTTAGAGGAACTGGGAAGTTGCTTACTTGCAAAACCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTGGAAGAAATGAGGAACTGTTATGATGGCTTCATTTCAGCAGCAGCTGCTACAACGAATGGCGTATATGgtacctcctgtttctaaattctaatgcttaacatggtttctgtcaacagttgatagcatgtttgtctatacatcatttcttaagttgatcatagtgtaatattgtgcag
- - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - GCTGCT