1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGgtccgagctcgctgcccccccccctcccattcccctttccccgtggaactagctcgttcttgcatctaaacgtttattatcccatctctaatttatttgg...
species | Oryza sativa |
transcript | LOC_Os02g26440.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGATCAAGCAG TTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCEST: gi|33805163|gb|CF328459.1|CF328459
genomic: AGATCAAGCAGgtccgagctc ... tttttatcagTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTC
EST: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAG TTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCEST: gi|88421172|gb|CI567013.1|CI567013
genomic: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGgtccgagctc ... tttttatcagTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTC
EST: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAG TTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCEST: gi|33816630|gb|CF334148.1|CF334148
genomic: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGgtccgagctc ... tttttatcagTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTC
EST: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAG TTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCEST: gi|33805165|gb|CF328460.1|CF328460
genomic: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGgtccgagctc ... tttttatcagTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTC
EST: AGATCAAGCAG TTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCEST: gi|58667807|gb|CK056493.1|CK056493
genomic: AGATCAAGCAGgtccgagctc ... tttttatcagTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTC
EST: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAG TTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCEST: gi|88692756|gb|CI736331.1|CI736331
genomic: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGgtccgagctc ... tttttatcagTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTC
EST: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAG TTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCEST: gi|33677160|gb|CF305399.1|CF305399
genomic: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGgtccgagctc ... tttttatcagTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTC
EST: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAG TTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCEST: gi|55442130|gb|CV734386.1|CV734386
genomic: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGgtccgagctc ... tttttatcagTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTC
EST: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAG TTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCEST: gi|88742276|gb|CI765784.1|CI765784
genomic: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGgtccgagctc ... tttttatcagTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTC
EST: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAG TTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTCEST: gi|86824043|gb|CI260706.1|CI260706
genomic: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGgtccgagctc ... tttttatcagTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTC
EST: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAG TTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTC
genomic: TCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGgtccgagctc ... tttttatcagTTGCAAACTCAGATGCGCTCTAAAGAGGGTGAAAAGAAGCGTGCTTACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTCGTGGAGCTGCAGGGTCGGATGATCGACACCACCGGGAAGATCAAGCAGgtccgagctcgctgcccccccccctcccattcccctttccccgtggaactagctcgttcttgcatctaaacgtttattatcccatctctaatttatttgg
- - - GTGGAG
- - - - GGAGCT
- - - - - AGCTGC
- - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccatctc