1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGGGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttgatactgcagctactgtttattcttaactgtttcttttccgtttctagcgctgattgataatttatctgttgcccacttgtctagtaacaccaaccaagtgttctttttctttctacggtgctcatggttgcacattgtaatttaattgtgaacattcatcatcaacag
species | Oryza sativa |
transcript | LOC_Os02g19510.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|58659150|gb|CK047830.1|CK047830
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|29676038|gb|CB672313.1|CB672313
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|58687148|gb|CK075835.1|CK075835
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|58670226|gb|CK058912.1|CK058912
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|58666569|gb|CK055255.1|CK055255
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|58691339|gb|CK080026.1|CK080026
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|29640936|gb|CB645943.1|CB645943
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|29624841|gb|CB629852.1|CB629852
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|88696183|gb|CI739758.1|CI739758
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|58601351|gb|CK011879.1|CK011879
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|66913022|gb|CX099870.1|CX099870
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|88356602|gb|CI626217.1|CI626217
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGGEST: gi|88396973|gb|CI578122.1|CI578122
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
EST: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAG CACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
genomic: GGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttga ... tcatcaacagCACGCCAAGATCAAATGAGGGGATGAGGCTCATATTCTCGGCAGTTGTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTACAGGTTTCTTCGGCAGCAACTGTAGTAGAAAAGAAAGAGGGGAAGATTCGCAGTTCATATGGCAAAACCTGCTAATAGCATTGGCCGTAGgtaggtttgatactgcagctactgtttattcttaactgtttcttttccgtttctagcgctgattgataatttatctgttgcccacttgtctagtaacaccaaccaagtgttctttttctttctacggtgctcatggttgcacattgtaatttaattgtgaacattcatcatcaacag
- - - - - - - - - - - - - - - - - - - - - - GGAAGA