Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGTGTTCTCCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgttcgttccccattcgcgcccgtcaacctcaatccgcgatctgatccatgctttcattttgtatcactgtctgtgagtacatgtgcggaatc...

Basic information

species Oryza sativa
transcript LOC_Os02g18550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g18550.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv05s0020g03900.t01 (Vitis vinifera), 5'ss of exon 3
TCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGTGTTCTCCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcg--ttcgttcgttccccattcgcgcccgtcaacctcaatccgcgatctgatccatgctttcatt----ttgtatcactgtctgtgagtacatgtgcggaatc
||||||| | |||||||||||||||||||||||||| ||  | || |||   || |||||  ||||||| |||||||| ||| | |||||||| ||||||||  |  ||   || ||     ||   |    |     | | |     |   |    ||| | |||||    ||| || |   ||| | ||| || |   |     
TCCCTTTGCAAAGAAGGATTGGTACGACATCAAGGCTCCTTCTGTCTTCGAAGTTCGCAATGTCGGCAAAACCCTCGTTTCCCGCACCCAGGGTACCAAGgtaggggtttcatcatttttt-ttactgttttttgtttttagtattttagtcgtcaaatg-tgtcattgcagttgaatgagcttctct-agttcagggttgag---

upper sequence: LOC_Os02g18550.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EDP08964 (Chlamydomonas reinhardtii), 5'ss of exon 2
TCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGTGTTCTCCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgttcgttccccattcgcgcccgtcaacctcaatccgcgat--ctgatccatgctttcattttgtatcactgtctgtgagtacatgtgcggaatc
 |||||  |||||||||| ||||| |||||||||||||| ||| ||||| | ||||||||| | ||||||||||| ||  ||||||| ||||| ||||||||  |  ||   |  |  |   ||| ||      || ||  ||||      || | ||   |    |  || | | | |                       
CCCCTTCGCCAAGAAGGACTGGTATGACATCAAGGCGCCCACCATGTTCACTGTCCGCAACGTGGGCAAGACCCTGGTGACCAGGACGCAGGGTACCAAGgt--gagcgagggggcggcgcccgcaccatct--ccgcaggccgctgcagttgcttcaccatgatttcctgcaacgcag-----------------------

upper sequence: LOC_Os02g18550.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S179_15V6.1 (Physcomitrella patens), 5'ss of exon 2
TCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGTGTTCTCCGTCCGCAACATCGGC-AAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgt------------tcgttcgttcgttccc---cattcgc--gcccgtcaacctcaatccgcgatctgatcc---atgctttcattttgtatcactgtctgtgagtacatgtgcggaatc-------------------
||| || ||||||||||||||||| ||||||||||| || | |   ||| | |       | | ||  |||||||||||| |||||||   ||| ||||||||            | ||| ||| |||       ||| |   |    | ||  |          ||||| |    ||| ||  | | || ||  ||||   |   | |   || |   |                    
TCCTTTCTCCAAGAAGGATTGGTATGACATCAAGGCTCCTAACACCTTCAC-GCAGAAGTCGTTGGGGAAGACCCTCGTCACCAGGACGGCGGGTACCAAGgtgcgagggtttgattgtttgtttgtttttatttatttgtttgtttattaaagttgggtttatctctgacctggtatggttatactgtgcatttctgtaattagcttctgatgagaggttttgtttgtttgggtttcag

upper sequence: LOC_Os02g18550.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S46_147V6.1 (Physcomitrella patens), 5'ss of exon 2
TCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGTGTTCTCCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgttcgttccccattcgcgccc-gtcaacctcaatccgcgatct--gatccatgc---tttcattttgtatcactgtctgtgagt-acatgtgcggaatc---------------------------------------------------
|||||| ||||||||||||||||| ||||||||||| || |     ||| |       ||| | || ||||| |||||  ||||||||  ||| || |||||  |    |  | | | |  || ||| | ||     |  |||      ||  |  || ||    ||| |||     |     | | ||||  | |||       |                                                    
TCCCTTCTCCAAGAAGGATTGGTATGACATCAAGGCACCCAATACTTTCACTCAAAAGAACTTGGGAAAGACTCTCGTGACCAGGACCGCGGGAACGAAGgtggggggttatgcttctctctctcgctctgtttgtgtgtatctctcgcctccgtcccgtggggatttgattgaagttggacatttatgagagagatggatacgcttttttcttttgtgaagttgtacacggaactgacgcgggtttggatgcgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33687809|gb|CF316048.1|CF316048
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|58602440|gb|CK012968.1|CK012968
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88308219|gb|CI649434.1|CI649434
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGCACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88587179|gb|CI704908.1|CI704908
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88363507|gb|CI618068.1|CI618068
EST:     CCGTCCGCAACATCGGGAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|33802917|gb|CF327329.1|CF327329
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCGAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|3759951|gb|C97209.1|C97209
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88673143|gb|CI727257.1|CI727257
EST:     CCGTCCGCAACCTCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|4878474|gb|AU062773.1|AU062773
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88342105|gb|CI644442.1|CI644442
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88334936|gb|CI648711.1|CI648711
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|218504336|gb|FG960758.1|FG960758
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88328472|gb|CI676680.1|CI676680
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|4878343|gb|AU062642.1|AU062642
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88338339|gb|CI655528.1|CI655528
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88670797|gb|CI724913.1|CI724913
EST:     CCGTCCGCAACCTCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|218486263|gb|FG964022.1|FG964022
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|58678754|gb|CK067441.1|CK067441
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|33807193|gb|CF329477.1|CF329477
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88584886|gb|CI702472.1|CI702472
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88691110|gb|CI735189.1|CI735189
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88327831|gb|CI657875.1|CI657875
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|33690861|gb|CF319100.1|CF319100
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|163918555|gb|EG714857.1|EG714857
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|33796645|gb|CF324190.1|CF324190
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88728960|gb|CI752470.1|CI752470
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88694134|gb|CI738172.1|CI738172
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|87006357|gb|CI293148.1|CI293148
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88675660|gb|CI729773.1|CI729773
EST:     CCGTCCGCAACCTCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88669835|gb|CI723951.1|CI723951
EST:     CCGTCCGCAACCTCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|218485395|gb|FG947740.1|FG947740
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|428717|gb|D24869.1|D24869
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88326139|gb|CI651194.1|CI651194
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|86887523|gb|CI294157.1|CI294157
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88670179|gb|CI724295.1|CI724295
EST:     CCGTCCGCAACCTCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88691670|gb|CI733748.1|CI733748
EST:     CGCTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CG-TCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88690991|gb|CI735070.1|CI735070
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|33655245|gb|CF277859.1|CF277859
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88728974|gb|CI752484.1|CI752484
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|55439670|gb|CV733145.1|CV733145
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|218491751|gb|FG947265.1|FG947265
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88400951|gb|CI684925.1|CI684925
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88329520|gb|CI648582.1|CI648582
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88666583|gb|CI718719.1|CI718719
EST:     CCGTCCGCAACCTCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88308477|gb|CI650886.1|CI650886
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCCGGA
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGC-GGA
EST: gi|88576445|gb|CI670590.1|CI670590
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88290442|gb|CI665231.1|CI665231
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88380862|gb|CI634887.1|CI634887
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|89172597|gb|CI721656.1|CI721656
EST:     CCGTCCGCAACCTCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88694873|gb|CI738911.1|CI738911
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGCACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88309215|gb|CI655223.1|CI655223
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|55437149|gb|CV731773.1|CV731773
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|58597856|gb|CK008384.1|CK008384
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGTGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88581637|gb|CI698837.1|CI698837
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88675786|gb|CI729358.1|CI729358
EST:     CCGTCCGCAACCTCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|117246664|gb|CT863247.1|CT863247
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88720549|gb|CI743848.1|CI743848
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGAACAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTCGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|3763663|gb|AU030415.1|AU030415
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88586796|gb|CI704514.1|CI704514
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88569521|gb|CI660696.1|CI660696
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|58677313|gb|CK066000.1|CK066000
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|58692409|gb|CK081096.1|CK081096
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|33804300|gb|CF328024.1|CF328024
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88336441|gb|CI643254.1|CI643254
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88335289|gb|CI650254.1|CI650254
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|1438560|gb|U60310.1|U60310
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|58599545|gb|CK010073.1|CK010073
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|568312|gb|D39155.1|D39155
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|38477786|gb|CF961919.1|CF961919
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCGGGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|33692843|gb|CF321082.1|CF321082
EST:     CCGCCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88688847|gb|CI732423.1|CI732423
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88575829|gb|CI669974.1|CI669974
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88735488|gb|CI758996.1|CI758996
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88302381|gb|CI668227.1|CI668227
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88670183|gb|CI724299.1|CI724299
EST:     CCGTCCGCAACCTCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88339781|gb|CI649038.1|CI649038
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|33687682|gb|CF315921.1|CF315921
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
EST: gi|88379044|gb|CI681875.1|CI681875
EST:     CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAG                         ATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT
genomic: CCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 68 (downstream exon)
Score: 89

TCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGTGTTCTCCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgt ... tattttctagATTGCATCTGAGGGTCTCAAGCATCGTGTCTTTGAAGTCTCCTTGGCGGATCTTCAGAATGACGAGGATCAGGCTTACAGGAAGGTTAGACTTCGTGCTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCCTTTTCCAAGAAGGATTGGTACGACATCAAGGCGCCGACCGTGTTCTCCGTCCGCAACATCGGCAAGACCCTCGTCTCCAGGACCCAGGGGACCAAGgttcgttcgttcgttccccattcgcgcccgtcaacctcaatccgcgatctgatccatgctttcattttgtatcactgtctgtgagtacatgtgcggaatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcgccc