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CTCCGTTTGGATGAGCTTAACATCAATGGCTCCATGACAGGGGAGGAACAACCAACGACCTCAGGGGTGGAGAATGGGCACCAGGAGCCATTTGTCATTGgttagtagtacttgctcagtgctgtttttgtctgtttattttgcaagtaatcagtaaatatcgactgttgtacataatgtagcccttttgcctcccgatgtttcattccctgatttggtttggattacag
species | Oryza sativa |
transcript | LOC_Os02g17320.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCAACGACCTCAGGGGTGGAGAATGGGCACCAGGAGCCATTTGTCATTG GTGTTGCCGGGGGTGCATCTTCAGGCAAAAGTACTGTATGCAAAATGATAAEST: gi|286561|gb|D15368.1|D15368
genomic: ACCAACGACCTCAGGGGTGGAGAATGGGCACCAGGAGCCATTTGTCATTGgttagtagta ... tggattacagGTGTTGCCGGGGGTGCATCTTCAGGCAAAAGTACTGTATGCAAAATGATAA
EST: ACCAACGACCTCAGGGGTGGAGAATGGGCACCAGGAGCCATTTGTCATTG GTGTTGCCGGGNGTGCATCTTCAGGCAAAAGTACTGTATGCAAAATGATAAEST: gi|88406369|gb|CI596496.1|CI596496
genomic: ACCAACGACCTCAGGGGTGGAGAATGGGCACCAGGAGCCATTTGTCATTGgttagtagta ... tggattacagGTGTTGCCGGGGGTGCATCTTCAGGCAAAAGTACTGTATGCAAAATGATAA
EST: ACCAACGACCTCAGGGGTGGAGAATGGGCACCAGGAGCCATTTGTCATTG GTGTTGCCGGGGGTGCATCTTCAGGCAAAAGTACTGTATGCAAAATGATAAEST: gi|58591679|gb|CF989987.1|CF989987
genomic: ACCAACGACCTCAGGGGTGGAGAATGGGCACCAGGAGCCATTTGTCATTGgttagtagta ... tggattacagGTGTTGCCGGGGGTGCATCTTCAGGCAAAAGTACTGTATGCAAAATGATAA
EST: ACCAACGACCTCAGGGGTGGAGAATGGGCACCAGGAGCCATTTGTCATTG GTGTTGCCGGGGGTGCATCTTCAGGCAAAAGTACTGTATGCAAAATGATAA
genomic: ACCAACGACCTCAGGGGTGGAGAATGGGCACCAGGAGCCATTTGTCATTGgttagtagta ... tggattacagGTGTTGCCGGGGGTGCATCTTCAGGCAAAAGTACTGTATGCAAAATGATAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCGTTTGGATGAGCTTAACATCAATGGCTCCATGACAGGGGAGGAACAACCAACGACCTCAGGGGTGGAGAATGGGCACCAGGAGCCATTTGTCATTGgttagtagtacttgctcagtgctgtttttgtctgtttattttgcaagtaatcagtaaatatcgactgttgtacataatgtagcccttttgcctcccgatgtttcattccctgatttggtttggattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA