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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGCTGCGTCAAGGCCAGGGCGGCGGCGCCTGAATCCGAGGCCAAGTGCCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacgttgttgtttcttgattcttgatgatgacgatagatgctttatgccctattttggatgatgatgatgttcgtttgtctgaattttggtttgtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g15550.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g15550.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G060896_T04 (Zea mays), 5'ss of exon 2
CCTTGCTGCGTCAAGGCCAGGGCGGCGGCGCCTGAATCCGAGGCCAAGTGCCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacgttgttgtttcttgattcttgatgatgacgatagatgctttatgccctattttggatgatgatgatgttcgtttgtctgaattttggtttgtgcag
|||||||||||||||||||| || || ||||| || |||||||||| ||||||||||||||| || || ||||||||||| || || || |||||| | |||| |   || |    | ||||| ||  | | |  || ||| ||| |   | || | ||||          |  |||| |     |   ||| | |  | |||||
CCTTGCTGCGTCAAGGCCAGAGCCGCCGCGCCGGAGTCCGAGGCCAGGTGCCACGCCACCGTCGTTTCAGGATGGTTCACTGAACCGCGATCGCGCTGTGgtaggcctcgat----tgtcttgcttggtaacgtagatgat-gatacagca-gcacaattt--------attactgtttgacc--cctgattgttgcctctgcag

upper sequence: LOC_Os02g15550.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G120578_T02 (Zea mays), 5'ss of exon 1
CCTTGCTGCGTCAAGGCCAGGGCGGCGGCGCCTGAATCCGAGGCCAAGTGCCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacgttgttgtttcttgattcttgatgatgacgatagatgctttatgccctattttggatgatgatgatgttcgtttgtctgaattttggtttgtgcag
||||||||||||||||| || ||||||||||| || || |||||||||||||| ||||||||||| || ||||||||||||||||| || || | | |||||| |   |  || | |  |||| ||| |||     || ||   |  ||    |  |  | |      ||   || ||  |    |   |||   |  |||||||
CCTTGCTGCGTCAAGGCGAGAGCGGCGGCGCCCGAGTCTGAGGCCAAGTGCCATGCCACCGTGGTTTCGGGATGGTTCACCGAGCCACGATCACACTGCGgtacgc--ccctggt-tcccttgcttcatgacatgtactattttttattaccactgtcatctcttaactggctattttattccaccctgattgctgcctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218497061|gb|FG955846.1|FG955846
EST:     CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCG                         GTAAAACGAGCAAAGTGCAGTATTACAATAACACGATGTGGCCAG
genomic: CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacg ... gtttgtgcagGTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
EST: gi|13165585|gb|AU174382.1|AU174382
EST:     CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCG                         GTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
genomic: CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacg ... gtttgtgcagGTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
EST: gi|58602035|gb|CK012563.1|CK012563
EST:     CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCG                         GTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
genomic: CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacg ... gtttgtgcagGTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
EST: gi|29642051|gb|CB647058.1|CB647058
EST:     CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCG                         GTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
genomic: CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacg ... gtttgtgcagGTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
EST: gi|29672898|gb|CB669173.1|CB669173
EST:     CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCG                         GTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
genomic: CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacg ... gtttgtgcagGTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
EST: gi|11025755|gb|AU162356.1|AU162356
EST:     CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCG                         GTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
genomic: CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacg ... gtttgtgcagGTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
EST: gi|88306532|gb|CI671284.1|CI671284
EST:     CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCG                         GTAAAACGAGCAAAGTGCAGTATTA
genomic: CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacg ... gtttgtgcagGTAAAACGAGCAAAGTGCAGTATTA
EST: gi|29664250|gb|CB660525.1|CB660525
EST:     CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCG                         GTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
genomic: CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacg ... gtttgtgcagGTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
EST: gi|88442871|gb|CI694277.1|CI694277
EST:     CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCG                         GTAAAACGAGCAAAGTGCAGTATTACAAT
genomic: CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacg ... gtttgtgcagGTAAAACGAGCAAAGTGCAGTATTACAAT
EST: gi|88352695|gb|CI678715.1|CI678715
EST:     CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCG                         GTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGGCAGGAG
genomic: CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacg ... gtttgtgcagGTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAGGAG
EST: gi|88371982|gb|CI681499.1|CI681499
EST:     CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCG                         GTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
genomic: CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacg ... gtttgtgcagGTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
EST: gi|29667240|gb|CB663515.1|CB663515
EST:     CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCG                         GTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG
genomic: CCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacg ... gtttgtgcagGTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAG