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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCATCGACCAGATCAAGGCCAACGTCGAGGACGTCTGCCCCGGCGTTGTCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcacccgagtgttcgacgcgtgctcgtgacatgcgtggcgagctggtgtgtgagcgacattcgtcttgtccatgcag

Basic information

species Oryza sativa
transcript LOC_Os02g14440.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g14440.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G117706_T01 (Zea mays), 5'ss of exon 2
GGTCATCGACCAGATCAAGGCCAACGTCGAGGACGTCTGCCCCGGCGTTGTCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcacccgagtgttcgacgcgtgctcgtgacatgcgtggcgagctggtgtgtgagcgacattcgtcttgtccatgcag--------
 || |||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||  | ||||| || ||       |||     ||| |    || |   |   |||     |   |         |  ||   |||              
CGTGATCGACCAGATCAAGGCCAACGTCGAGCTCATCTGCCCCGGCGTTGTCTCCTGCGCCGACATTGTCGCCCTCGCCGCGCGAGACGGCACCTTCTTGgtaagtacat----acgttacgtacgtacgta-gatagatgaaccgactccatcactacttactgctgctccgatccgcatcatcggtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29657997|gb|CB654272.1|CB654272
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTG                         CTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcac ... gtccatgcagCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG
EST: gi|29668843|gb|CB665118.1|CB665118
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCGG                         N
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcac ... gtccatgcag-
EST: gi|29668843|gb|CB665118.1|CB665118
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCGG                         N
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcac ... gtccatgcag-
EST: gi|29667713|gb|CB663988.1|CB663988
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTG                         CTCGGCGGGCCGAGCTGGGC
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcac ... gtccatgcagCTCGGCGGGCCGAGCTGGGC
EST: gi|29656203|gb|CB652478.1|CB652478
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTG                         CTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcac ... gtccatgcagCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG
EST: gi|29659429|gb|CB655704.1|CB655704
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTN                         CTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcac ... gtccatgcagCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG
EST: gi|29660893|gb|CB657168.1|CB657168
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCC-TG                         G
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcac ... gtccatgcag-
EST: gi|29660893|gb|CB657168.1|CB657168
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCC-TG                         G
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcac ... gtccatgcag-
EST: gi|29659605|gb|CB655880.1|CB655880
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTG                         CTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcac ... gtccatgcagCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG
EST: gi|29657998|gb|CB654273.1|CB654273
EST:     CGCCGACATNGTCGCCCTCGCCGCGCGCGACAGCACCGCCTTG                         CTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGTCCGGTGCGACTCGACGACG
genomic: CGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcac ... gtccatgcagCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG
EST: gi|29655928|gb|CB652203.1|CB652203
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCGG                         CTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcac ... gtccatgcagCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG
EST: gi|29663080|gb|CB659355.1|CB659355
EST:     TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTG                         CTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG
genomic: TCTCCTGCGCCGACATCGTCGCCCTCGCCGCGCGCGACAGCACCGCCCTGgtacgttcac ... gtccatgcagCTCGGCGGGCCGAGCTGGGCGGTGCCGCTCGGCCGGTGCGACTCGACGACG