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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctccaccagcttccgcaagccttttcttcccttagctccattgttgtctcatttgaagtattatgatgggttcttggattggtggtggaacatgc...

Basic information

species Oryza sativa
transcript LOC_Os02g13990.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218492413|gb|FG947005.1|FG947005
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
EST: gi|29681478|gb|CB677753.1|CB677753
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
EST: gi|86904173|gb|CI306591.1|CI306591
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
EST: gi|88406774|gb|CI603968.1|CI603968
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
EST: gi|88445434|gb|CI584547.1|CI584547
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTGACACAATTGACTTGTCA
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTTGACACAATTGACTTGTCA
EST: gi|86891922|gb|CI310086.1|CI310086
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
EST: gi|58602112|gb|CK012640.1|CK012640
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
EST: gi|88745945|gb|CI769305.1|CI769305
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTGACACA
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTTGACACA
EST: gi|88740329|gb|CI763837.1|CI763837
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTGACACAATTGAC
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTTGACACAATTGAC
EST: gi|88400407|gb|CI593482.1|CI593482
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTTGACACAATTTGACTTGTCAGACAATGAGATTGTCAAGCTTG
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTT-GACACAATT-GACTTGTCAGACAATGAGATTGTCAAGCTTG
EST: gi|38473912|gb|CF958044.1|CF958044
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
EST: gi|58662231|gb|CK050911.1|CK050911
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTTGACACAATTGACTTGTCAGACAATGAGATTGTCAAGCTTGAG
EST: gi|5005008|gb|AU068325.1|AU068325
EST:     GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAG                         GACCAATTTGANACAATT
genomic: GTAACAAGATCCCCATCATCGAGAATCTGGGCGCCACCGAGgtgagctcca ... tctcaaatagGACCAATTTGACACAATT