1 5' 3' | 2 5' 3' | 3 5' 3' |
CCGCACCCACTTCGGAGGAGGCAAGTCCACCGGATTCGGACTCATCTACGACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcctctcttgtctcgttgatctcgccctgctcttgatagtttagtttaatcgtgatgctatgctgaaatctgaacaatctagtactactagagt...
species | Oryza sativa |
transcript | LOC_Os02g13530.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|87031413|gb|CI261787.1|CI261787
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|88213743|gb|CI213592.1|CI213592
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|55411479|gb|CV723855.1|CV723855
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|427216|gb|D23298.1|D23298
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|87007097|gb|CI277172.1|CI277172
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCTCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|88558939|gb|CI489471.1|CI489471
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTTTCGCAAGCAGATGAAGGAGAGGEST: gi|87011719|gb|CI281421.1|CI281421
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: GTACAGGCTCATCAGG AATGGCCTCGCCACCAAGTTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|86416175|gb|CI030186.1|CI030186
genomic: GTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|3762404|gb|C99652.1|C99652
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|86510587|gb|CI153220.1|CI153220
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|88208253|gb|CI208102.1|CI208102
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|88524829|gb|CI453780.1|CI453780
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|38471297|gb|CF955428.1|CF955428
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|86420572|gb|CI056561.1|CI056561
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|88242685|gb|CI242534.1|CI242534
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|8336460|gb|BE040907.1|BE040907
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAAG AATGGCCTCGCCACCAAAGTTGAGAAAGTCTCGCAAGCAGATGAAGGAGAGEST: gi|88241783|gb|CI241632.1|CI241632
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAA-GTCTCGCAAGCAGATGAAGGAGAG
EST: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGGEST: gi|87022540|gb|CI267677.1|CI267677
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
EST: ACGACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGG AATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
genomic: ACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcct ... atacctacagAATGGCCTCGCCACCAAGGTTGAGAAGTCTCGCAAGCAGATGAAGGAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCACCCACTTCGGAGGAGGCAAGTCCACCGGATTCGGACTCATCTACGACAACCTCGACGCCGCCAAGAAGTACGAGCCCAAGTACAGGCTCATCAGGgtacgcgcctctcttgtctcgttgatctcgccctgctcttgatagtttagtttaatcgtgatgctatgctgaaatctgaacaatctagtactactagagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcgccc