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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAGgttggtcttgcctgctttgctacttgcataatgaatgacaattgcactgttgagcttgactttggaatcttcccttag

Basic information

species Oryza sativa
transcript LOC_Os02g13300.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g13300.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G161299_T01 (Zea mays), 5'ss of exon 2
ACTAGAAGAGCAGAATTCCATGGTTCTGGATTAATTGGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAGgttggtct-tgcctgctttgctacttgcataatg-------aatgacaattgcactgttgagcttgactttggaat---cttcccttag
|| |||||||| || ||||||||||||||||| |||||||| || |||||||||| ||| |||||||| |||||||||||||||||||| | || | |||  |||||       ||  |        ||| |    |||||| |||||||||||||   |||   ||| | ||||
ACAAGAAGAGCGGAGTTCCATGGTTCTGGATTGATTGGATCCTTCCGAACAATCTATCGGACAGAAGGTCTTTTAGGGTTTTACAGgtttgcctcttcctaatttgcgtgacaaatggtagtctattaataaatgatgcactcttgagcttgacttcttaattgtctttctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33677964|gb|CF306203.1|CF306203
EST:     GGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAG                         GGGAATTGTTTCCAGTGTTGCTCGGATTGTTCCTTATGCAGCTTTGCATTA
genomic: GGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAGgttggtcttg ... cttcccttagGGGAAATGGAGCCAGTGTTGCTCGGATTGTTCCTTATGCAGCTTTGCATTA
EST: gi|300215830|gb|HO088456.1|HO088456
EST:     GGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAG                         GGGAAATGGAGCCAGTGTTGCTCGGATTGTTCCTTATGCAGCTTTGCATTA
genomic: GGATCATTTCGAACAATCTCTCGAACAGAAGGGCTTTTAGGGTTTTACAGgttggtcttg ... cttcccttagGGGAAATGGAGCCAGTGTTGCTCGGATTGTTCCTTATGCAGCTTTGCATTA