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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCCGGTTCAGGTGCTGGTTTGGGCCATGGCCGCAGCAACTGTGCTTGGAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaacataagtattattactccaaattgaagtttaaccatcatcatgatgtatgtatatatagggactgacagaatgaaagtttaagaacttcat...

Basic information

species Oryza sativa
transcript LOC_Os02g12480.7
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29618295|gb|CB623307.1|CB623307
EST:     GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG                         GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST: gi|33666396|gb|CF297363.1|CF297363
EST:     GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG                         GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST: gi|88836886|gb|CI014887.1|CI014887
EST:     GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG                         GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST: gi|88457113|gb|CI531712.1|CI531712
EST:     AGGGTTCTACGCATTCTTCCTCCGCTCCGATGAGAAAAACCCTATTGAG                         GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGGTTTGGCATTTNTCAG
genomic: AGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCT-GTTTGGCATTTGTCAG
EST: gi|84117007|gb|CD150774.1|CD150774
EST:     GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG                         GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST: gi|87018821|gb|CI256706.1|CI256706
EST:     GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG                         GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST: gi|29618228|gb|CB623240.1|CB623240
EST:     GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG                         GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST: gi|88832658|gb|CI008254.1|CI008254
EST:     GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG                         GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST: gi|568828|gb|D39677.1|D39677
EST:     GAGGGTTCTACGCATTCTTCCTCCACTCCGATGNNNNNNNGCCTATTGAG                         GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: GAGGGTTCTACGCATTCTTCCTCCACTCCGATGAAAAAAAGCCTATTGAGgtaacgtaac ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA