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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGAATTCATTTCATCGCGCTGCACCGATTGCTGTTCTTCTATGGATTTGACACTGAAAAAGGGGGACAGCGTGATTCACTCGAGTTGAGATTTCTCAGgtgtcaaaaggcaaaacgacattgatgcatgagtgttcttggatgcttctttacatatgtagcaggaaactataggatgaggaaaaggaactccttgaagttcagtatttctgtttggttgatgcatatttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g10480.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88390125|gb|CI590638.1|CI590638
EST:     GACAATGAAAAAGGGGGACAGCGTGATTCACTCGAGTTGAGATTTCTCAG                         GACTGAAAACATTGGAAAGTGTAACTAAGCAGTAAGAAGATCTGAATATGA
genomic: GACACTGAAAAAGGGGGACAGCGTGATTCACTCGAGTTGAGATTTCTCAGgtgtcaaaag ... atatttgcagGACTGAAAACATTGGAAAGTGTAACTAAGCAGTAAGAAGATCTGAATATGA
EST: gi|29645546|gb|CB650553.1|CB650553
EST:     GACACTGAAAAAGGGGGACAGCGTGATTCACTCGAGTTGAGATTTCTCAG                         GACTGAAAACATTGGAAAGTGTAACTAAGCAGTAAGAAGATCTGAATATGA
genomic: GACACTGAAAAAGGGGGACAGCGTGATTCACTCGAGTTGAGATTTCTCAGgtgtcaaaag ... atatttgcagGACTGAAAACATTGGAAAGTGTAACTAAGCAGTAAGAAGATCTGAATATGA