1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttgatcaactactcttttctttgttacgagaaacaggatgaccatttatgaaatcactaacttctctgtttttatcatttag
species | Oryza sativa |
transcript | LOC_Os02g10310.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|29643533|gb|CB648540.1|CB648540
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|4969133|gb|AU066037.1|AU066037
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTCEST: gi|58654638|gb|CK043318.1|CK043318
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
EST: CGGTTTTGCGTGACAACGAGGCCGTGAAGAAGAAGTGCCTTGTTCCCATG AGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
genomic: CGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttga ... tatcatttagAGCGACACAGAGATGCTTCTGCCAATCACGGTAGGAGACTACACCGACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATGAGCCGGTTTTGCGTGACAACGAGGCCTTGAAGAAGAAGTGCCTTGTTCCCATGgtgagcttgatcaactactcttttctttgttacgagaaacaggatgaccatttatgaaatcactaacttctctgtttttatcatttag
- - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - AGAAGT