1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCTGCTGCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAGgtactgcgacccccgtcttctctctcttgtggggcggcgcttcctcttcgccccaccacccccaaatggcaaatattggaagtgaatcatccatcataca...
species | Oryza sativa |
transcript | LOC_Os02g10180.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAG AAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTACAAATGAEST: gi|88421491|gb|CI618615.1|CI618615
genomic: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGA
EST: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAG AAGGC-AAGATAATGATCCATCTACTTTGEST: gi|29664002|gb|CB660277.1|CB660277
genomic: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTCTACTTTG
EST: CTTCGTCTTCGCTCACC ATTGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGAEST: gi|88407064|gb|CI581151.1|CI581151
genomic: CTTCGTCTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGA
EST: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAG AAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGEST: gi|58679386|gb|CK068073.1|CK068073
genomic: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAG
EST: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAG AAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGAEST: gi|88397149|gb|CI593361.1|CI593361
genomic: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGA
EST: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAG AAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGAEST: gi|88731190|gb|CI754803.1|CI754803
genomic: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGA
EST: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAG AAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTEST: gi|88417075|gb|CI573790.1|CI573790
genomic: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCT
EST: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAG AAGGC-AAGATAATGATCCCTCTACEST: gi|58664588|gb|CK053274.1|CK053274
genomic: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTCTAC
EST: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAG AAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGAEST: gi|88725664|gb|CI748923.1|CI748923
genomic: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGA
EST: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAG AAGGCCAAGATAATGATCCCTCEST: gi|29685029|gb|CB681304.1|CB681304
genomic: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTC
EST: CTTCGCTCAAG AAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTATAAATGAEST: gi|29663959|gb|CB660234.1|CB660234
genomic: CTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGA
EST: CTTCGTCTTCGCTCAAG AAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGAEST: gi|58694698|gb|CK083385.1|CK083385
genomic: CTTCGTCTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGA
EST: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAG AAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGA
genomic: GCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAGgtactgcgac ... attttttcagAAGGCCAAGATAATGATCCCTCTACTTTGTTCAAACGAGCCTTAGAAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTAAGAGAGCATGGTGGCGATGGCGCGGTGGCCGTGGAGGGTGCTGCTGCCGCTGCTTCTCCTTCACTCCTCCCCCGTCTTCTTCGTCTTCGCTCAAGgtactgcgacccccgtcttctctctcttgtggggcggcgcttcctcttcgccccaccacccccaaatggcaaatattggaagtgaatcatccatcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC