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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCGTCGCAGCTGGCTGGGTGGTCGGCCGGCGGCGGCGGCGACCCTTGCGGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcccgtgatgcgacagcgaagctttcattggcttttttttattggatttgatgagttctttcattggctggtgtttgattcttactgcattct...

Basic information

species Oryza sativa
transcript LOC_Os02g09740.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g09740.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G103070_T02 (Zea mays), 5'ss of exon 2
---GCCCGTCGCAGCTGGCTGGGTGGTCGGCCGGCGGCGGCGGCGACCCTTGCGGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcccgtgatg--cgacagcgaagctttcattggcttttttttattggatttgatgagttctttcattggctggtg-tttgattcttactgcattct
   ||||||||||||||||||||||||||||| |||||||   ||| || |||||||||| |||||||||  || ||||||| ||||| |||||||||||||||||| ||||||||||    | ||| | |||    | |   | | ||     |  | || ||   | | |  || |   |||| |||            |||||
ACAGCCCGTCGCAGCTGGCTGGGTGGTCGGCCAGCGGCGG---CGATCCCTGCGGCGCGGCGTGGCAGGGCGTCGCCTGCTCTGGCGCCGGCGTCACCGAAATgtaa-gatcccgtgaacgcccacatcaaaggaaccttcttcgtgttagagatatagtttata--tccatctatagaaaggtggtttaggggactagatattct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88310800|gb|CI659403.1|CI659403
EST:     GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAAT                         GCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAGTCT
genomic: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcc ... tgtatagtagGCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAGTCT
EST: gi|88721234|gb|CI744533.1|CI744533
EST:     GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAAT                         T
genomic: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcc ... tgtatagtag-
EST: gi|88721234|gb|CI744533.1|CI744533
EST:     GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAAT                         T
genomic: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcc ... tgtatagtag-
EST: gi|88721234|gb|CI744533.1|CI744533
EST:     GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAAT                         T
genomic: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcc ... tgtatagtag-
EST: gi|88575273|gb|CI669418.1|CI669418
EST:     GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAAT                         GCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAGTCT
genomic: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcc ... tgtatagtagGCTTGCTGGGGTAGGACTGGATGGCTCTCTGGGATATGAACTCTCCAGTCT
EST: gi|88726154|gb|CI749809.1|CI749809
EST:     GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAAT                         T
genomic: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcc ... tgtatagtag-
EST: gi|88726154|gb|CI749809.1|CI749809
EST:     GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAAT                         T
genomic: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcc ... tgtatagtag-
EST: gi|88726154|gb|CI749809.1|CI749809
EST:     GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAAT                         T
genomic: GGCGCGGGGTGGCAGGGGATCTCCTGCTCCGGCGCTGGCGTCACCGAAATgtaaagatcc ... tgtatagtag-