1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGGTCAGACGGCATGGGCTTTGGTCCCTTAATGCTGACCGAGGGTGAAAGATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAGgtagccttttgtcctttgaaatgcttcatccatcatcgtagtgcattatttgtgaaccaaaatgtcctgcctgtag
species | Oryza sativa |
transcript | LOC_Os02g08544.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAG GGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCGGEST: gi|29663726|gb|CB660001.1|CB660001
genomic: ATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAGgtagcctttt ... ctgcctgtagGGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCGG
EST: GATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAG GGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCGGEST: gi|29661445|gb|CB657720.1|CB657720
genomic: GATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAGgtagcctttt ... ctgcctgtagGGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCGG
EST: GATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAG GGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCGGEST: gi|3760309|gb|C97565.1|C97565
genomic: GATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAGgtagcctttt ... ctgcctgtagGGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCGG
EST: -CCTTGGTTGA-CCTTTACGGCATGAGCTGAAGAACGAGCTTTAAGCCAG GGNTACAAGGAAAAGCTTGTGGATATTAGGGAAGAGATCNTTCGCAAGCGEST: gi|2312070|gb|C28225.1|C28225
genomic: TCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGC-TTAAG-CAGgtagcctttt ... ctgcctgtagGGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCG
EST: GATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAG GGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCGGEST: gi|88302049|gb|CI667895.1|CI667895
genomic: GATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAGgtagcctttt ... ctgcctgtagGGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCGG
EST: GATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAG GGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCGGEST: gi|29670827|gb|CB667102.1|CB667102
genomic: GATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAGgtagcctttt ... ctgcctgtagGGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCGG
EST: GATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAG GGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCGG
genomic: GATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAGgtagcctttt ... ctgcctgtagGGGTACAAAGAAAAGCTTGTGGATATTAGGGAAGAGATCCTTCGCAAGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGTCAGACGGCATGGGCTTTGGTCCCTTAATGCTGACCGAGGGTGAAAGATCCTTGGTTGAGCGTGTACGGCATGAGCTGAAGAACGAGCTTAAGCAGgtagccttttgtcctttgaaatgcttcatccatcatcgtagtgcattatttgtgaaccaaaatgtcctgcctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT