1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCTCGCCTCCATCCGCATGGTCATGTCCGGTGCCGCGCCCATGGGGAAGGACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACAGgtaaattgatgccacattacaatcattgcgcggacgaaaacaaaatctcctctctctctctttttttttgagtcactgacaagttagtccgtcatatcccttcttctttag
species | Oryza sativa |
transcript | LOC_Os02g08100.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACAG GGTTACGGTATGACTGAGGCTGGGCCAGTGCTGGCAATGTGCCTGGCGTTTEST: gi|58677400|gb|CK066087.1|CK066087
genomic: ACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACAGgtaaattgat ... tcttctttagGGTTACGGTATGACTGAGGCTGGGCCAGTGCTGGCAATGTGCCTGGCGTTT
EST: ACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACAG GGTTACGGTATGACTGAGGCTGGGCCAGTGCTGGCAATGTGEST: gi|29657567|gb|CB653842.1|CB653842
genomic: ACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACAGgtaaattgat ... tcttctttagGGTTACGGTATGACTGAGGCTGGGCCAGTGCTGGCAATGTG
EST: ACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACAG GGTTACGGTATGACTEST: gi|29688318|gb|CB684593.1|CB684593
genomic: ACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACAGgtaaattgat ... tcttctttagGGTTACGGTATGACT
EST: ACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACAG GGTTACGGTATGACTGAGGCTGGGCCAGTGCTGGCAATGTGCCTGGCGTTT
genomic: ACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACAGgtaaattgat ... tcttctttagGGTTACGGTATGACTGAGGCTGGGCCAGTGCTGGCAATGTGCCTGGCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCGCCTCCATCCGCATGGTCATGTCCGGTGCCGCGCCCATGGGGAAGGACCTTCAGGATGCATTCATGGCCAAGATCCCCAATGCCGTCCTCGGACAGgtaaattgatgccacattacaatcattgcgcggacgaaaacaaaatctcctctctctctctttttttttgagtcactgacaagttagtccgtcatatcccttcttctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG