1 5' 3' | 2 5' 3' | 3 5' 3' |
TCACCGTGCCTTCTCTCCAGCAATGGGAGGTGGCATTCGACCTGATCTTACAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtacccccaaatccccaaactgttttcttcttccgagggaaagcccaagatggttccaaatttacctatactgtgcaccagctctcttgtccattt...
species | Oryza sativa |
transcript | LOC_Os02g06770.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88553448|gb|CI483562.1|CI483562
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: ATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88542912|gb|CI472271.1|CI472271
genomic: ATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CCAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88543595|gb|CI473616.1|CI473616
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88560174|gb|CI490812.1|CI490812
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88332112|gb|CI643529.1|CI643529
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88347687|gb|CI655040.1|CI655040
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88552202|gb|CI482333.1|CI482333
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88479926|gb|CI417197.1|CI417197
genomic: CTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|66918327|gb|CX105175.1|CX105175
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|163926082|gb|EG711810.1|EG711810
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88538683|gb|CI467735.1|CI467735
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|163925821|gb|EG709617.1|EG709617
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88307704|gb|CI644744.1|CI644744
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88560675|gb|CI491361.1|CI491361
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: AATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88524163|gb|CI452057.1|CI452057
genomic: AATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACCGTGCCTTCTCTCCAGCAATGGGAGGTGGCATTCGACCTGATCTTACAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtacccccaaatccccaaactgttttcttcttccgagggaaagcccaagatggttccaaatttacctatactgtgcaccagctctcttgtccattt
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