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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCCATGGAAAGCCTTCCTCCTGTACGGGCCACCGGGGACGGGCAAATCTTACTTGGCCAAAGCCGTCGCGACAGAGGCCGATTCCACATTCTTCAGgtaattgattttcttctcatttcttgtactggtactagttgattagttagtgggttctttcacatttgtgatcgaattggttgcgtgcgttcgattcatt...

Basic information

species Oryza sativa
transcript LOC_Os02g06490.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g06490.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA12G09300.1 (Glycine max), 5'ss of exon 2
GGAAGCCATGGAAAGCCTTCCTCCTGTACGGGCCACCGGGGACGGGCAAATCTTACTTGGCCAAAGCCGTCGCGACAGAGGCCGATTCCACATTCTTCAGgta-attgattttcttctcatttcttgtactggtactagttgattagttagtgggttctttcacatttgtgatcgaattggttgcgtgcgttcgattcatt--
|    || |||| ||| ||  |  ||||||| || ||||||||||| ||||| || |||||||| ||||| || ||||| || ||||| || || |||||||| ||| |||    ||  |||  |||   |      |||   |   || ||| |   || || | |||     ||||    |  ||   || | || |    
GACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGGGTAAATCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttattgatatcctattgtttgagattagttaagtacctgctttggtgagcggttgcaaaattggttctgaatgaaataggt---tttggttgaaatt

upper sequence: LOC_Os02g06490.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA11G19120.1 (Glycine max), 5'ss of exon 2
GGAAGCCATGGAAAGCCTTCCTCCTGTACGGGCCACCGGGGACGGGCAAATCTTACTTGGCCAAAGCCGTCGCGACAGAGGCCGATTCCACATTCTTCAGgta-attgattttcttctcatttcttgtactggtactagttgattagttagtgggttctttcacatttgtgatcgaattggttgcg---tgcgttcgattcatt
|    || |||| ||| ||| |  ||||||| || ||||||||||| ||||| || |||||||| ||||| || ||||| || ||||| || || |||||||| ||| ||  | || |  |||      ||   | ||  ||  |  || |   |  |||| |||    | || |||   | || |   |  ||| |  | |  
GACGACCTTGGAGAGCGTTCTTGTTGTACGGACCGCCGGGGACGGGGAAATCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGgtagatttataattttgttgtttaagcctcta--attaagtgtgtgttttggatgaacttttacaaaatttattgaaaatgatgtgatttatgtttgtatga--