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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTACATCAAGTTATCGAAGCAAATCATGACCTTAGCCCAGAGCATCACCGTTTTTTCTTGTACCAACTTCTTTGTGCTCTCAAGTACATACATTCAGgttagtgatgaaattagcatctaattaaccttgtcaccaacagccacttcattccaaatctgtatactttgtggaagttatatttcaaccattaatcattactgagtttctgatatatggtttaacttgtctcag

Basic information

species Oryza sativa
transcript LOC_Os02g04230.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g04230.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G374088_T01 (Zea mays), 5'ss of exon 2
GATCTACATCAAGTTATCGAAGCAAATCATGACCTTAGCCCAGAGCATCACCGTTTTTTCTTGTACCAACTTCTTTGTGCTCTCAAGTACATACATTCAGgttagtgatgaaattagcatctaattaaccttgtcaccaacagccacttcattccaaatctgtatactttgtggaagttatatttcaaccattaatcattactgagtttctgatatatggtttaacttgtctcag
|| || |||||||| ||| |||||||| || |||| |  |||||||||||||| |||||| |||| |||||| || |||||||||||||||| |||||||||| || | |||  ||  |  ||||| ||||  ||| ||||| | ||      ||  |||| | |  | | || ||  ||||   |  |                                              
GACCTGCATCAAGTGATCAAAGCAAATGATAACCTGACTCCAGAGCATCACCGCTTTTTCCTGTATCAACTTATTCGTGCTCTCAAGTACATGCATTCAGgtttgttaggaacatattaaataattcacctcatcatcaacatcaacagtcacccctatctttctgatatatgtaacctataacactgcag--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117220894|gb|CT845593.1|CT845593
EST:     CCGTTTTTTCTTGTACCAACTTCTTTGTGCTCTCAAGTACATACATTCAG                         CTAATGTATTTCATCGTGACTTAAAGCCAAAGAACATACTGGCCAATTCAG
genomic: CCGTTTTTTCTTGTACCAACTTCTTTGTGCTCTCAAGTACATACATTCAGgttagtgatg ... cttgtctcagCTAATGTATTTCATCGTGACTTAAAGCCAAAGAACATACTGGCCAATTCAG
EST: gi|58655691|gb|CK044371.1|CK044371
EST:     CGTTTTTTCTTGTACCAAGTGCGTTTGTGCTCTCAAGTACATACATTCAG                         CTAATGTATTTCATCGTGACTTAAAGCCAAAGAACATACTGGCCAATTCAG
genomic: CGTTTTTTCTTGTACCAACTTC-TTTGTGCTCTCAAGTACATACATTCAGgttagtgatg ... cttgtctcagCTAATGTATTTCATCGTGACTTAAAGCCAAAGAACATACTGGCCAATTCAG