1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGAGATGCCGATGAGGCCTGTGCGGCCAGGGCCGCCGATGCAGTACCGGGGGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctcctccgtgcccccctcccaatcgatgcgctggaacagcagtagattgcgtactaccttgcgattcgacggcattgtgttccagttcgattctgctaggttaaccatgttgattgatttgtttacttactgttcactatcgggttcttttgcag
species | Oryza sativa |
transcript | LOC_Os02g02960.4 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|58586370|gb|CF984678.1|CF984678
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|5667412|gb|AU077654.1|AU077654
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|33806035|gb|CF328897.1|CF328897
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|58603994|gb|CK014522.1|CK014522
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAACAGEST: gi|88348144|gb|CI637605.1|CI637605
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAA-AG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|88352110|gb|CI613761.1|CI613761
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGGAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|88694523|gb|CI738561.1|CI738561
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|58587706|gb|CF986014.1|CF986014
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|58664968|gb|CK053654.1|CK053654
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: CGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|33659745|gb|CF282358.1|CF282358
genomic: CGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|88399521|gb|CI606142.1|CI606142
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|23514260|gb|BU673547.1|BU673547
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GCCTTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|33658759|gb|CF281372.1|CF281372
genomic: GCC-TCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|58590816|gb|CF989124.1|CF989124
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: TCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTGTCGTGCTCCGGGTTTTCACAAAGEST: gi|88329643|gb|CI650106.1|CI650106
genomic: TCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|88760807|gb|CI770363.1|CI770363
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|29659833|gb|CB656108.1|CB656108
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|38468952|gb|CF953083.1|CF953083
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGATAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|33660656|gb|CF291623.1|CF291623
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GCCTCCTCCCATGGCTCGCGCGCGCTGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|4714342|gb|AU058309.1|AU058309
genomic: GCCTCCTCCCATGGCTCGCGCGCGC-GTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAGEST: gi|27576068|gb|CA998762.1|CA998762
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
EST: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAG ACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
genomic: GGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc ... tcttttgcagACGTGCCCTCTCCTGCTCCGGGTTTTCACAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGATGCCGATGAGGCCTGTGCGGCCAGGGCCGCCGATGCAGTACCGGGGGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctcctccgtgcccccctcccaatcgatgcgctggaacagcagtagattgcgtactaccttgcgattcgacggcattgtgttccagttcgattctgctaggttaaccatgttgattgatttgtttacttactgttcactatcgggttcttttgcag
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