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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAAATATGgtgagagtcccgcacatgctgatactatgaactagggttttctttttgttcaagagctgacaaagcattgtttccattcctgttttccag

Basic information

species Oryza sativa
transcript LOC_Os02g02750.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11172065|gb|AU164099.1|AU164099
EST:     CCCGCTCTGGTTCCCGCCAAATATG                         ATTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCNNN
genomic: CCCGCTCTGGTTCCCGCCAAATATGgtgagagtcc ... tgttttccagATTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCTTT
EST: gi|29646388|gb|CB651395.1|CB651395
EST:     CCCGCTCTGGTTCCCGCCAAATATG                         ATTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCNNN
genomic: CCCGCTCTGGTTCCCGCCAAATATGgtgagagtcc ... tgttttccagATTACACTGACAGGCTTCATGTTTCTATTGACATCGGCATTCCTTGGCTTT