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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTCCCTTCTGAGTGATATCAAGGCCTTGGTTGCCCGGCATCCAGACAAGTTGAGTgtgagtggtttaactgccctatttcagtcattgttggccagtttgttttgttgcatactagtgtttcttatgaaattttgattgaatcgttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g02710.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02710.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G006069_T01 (Zea mays), 5'ss of exon 2
TGATTCCCTTCTGAGTGATATCAAGGCCTTGGTTGCCCGGCATCCAGACAAGTTGAGTgtgagtggtttaactgccctatttcagtcattgttggccagtttgttttgttgcatactagtgtttcttatgaaattttgattgaatcgttgcag
||| || |||||| |||| |||||||| |||||||| |||||| |   ||| ||||||||||||||||   |||  ||    || |  |  |||||| | ||| ||||||   | |    |    ||||   ||| ||| | |   |||||||
TGACTCTCTTCTGCGTGAAATCAAGGCTTTGGTTGCTCGGCATTCCAGCAAATTGAGTgtgagtggttcccctgttcttggccaattctctttggccggcttgatttgtt---tccagcagccctttatctgattctgaataatgtgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58662923|gb|CK051609.1|CK051609
EST:     TTCTGAGTGATATCAAGGCCTTGGTTGCCCGGCATCCAGACAAGTTGAGT                         ATGGATACCATAACAGCAAGTAACAAAGGGTATTCCACAGACCTCTTTATC
genomic: TTCTGAGTGATATCAAGGCCTTGGTTGCCCGGCATCCAGACAAGTTGAGTgtgagtggtt ... atcgttgcagATGGATACCATAACAGCAAGTAACAAAGGGTATTCCACAGACCTCTTTATC